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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "cageminer" in publications use:'
type: software
license: GPL-3.0-only
title: 'cageminer: Candidate Gene Miner'
version: 1.11.0
doi: 10.1093/insilicoplants/diac018
abstract: This package aims to integrate GWAS-derived SNPs and coexpression networks
  to mine candidate genes associated with a particular phenotype. For that, users
  must define a set of guide genes, which are known genes involved in the studied
  phenotype. Additionally, the mined candidates can be given a score that favor candidates
  that are hubs and/or transcription factors. The scores can then be used to rank
  and select the top n most promising genes for downstream experiments.
authors:
- family-names: Almeida-Silva
  given-names: Fabrício
  email: fabricio_almeidasilva@hotmail.com
  orcid: https://orcid.org/0000-0002-5314-2964
- family-names: Venancio
  given-names: Thiago
  orcid: https://orcid.org/0000-0002-2215-8082
preferred-citation:
  type: article
  title: 'cageminer: an R/Bioconductor package to prioritize candidate genes by integrating
    genome-wide association studies and gene coexpression networks'
  authors:
  - family-names: Almeida-Silva
    given-names: Fabricio
  - family-names: Venancio
    given-names: Thiago M.
  journal: in silico Plants
  year: '2022'
  volume: '4'
  issue: '2'
  url: https://doi.org/10.1093/insilicoplants/diac018
  doi: 10.1093/insilicoplants/diac018
  start: diac018
repository: https://bioc.r-universe.dev
repository-code: https://github.com/almeidasilvaf/cageminer
url: https://support.bioconductor.org/t/cageminer
contact:
- family-names: Almeida-Silva
  given-names: Fabrício
  email: fabricio_almeidasilva@hotmail.com
  orcid: https://orcid.org/0000-0002-5314-2964