Jaffe AE, Murakami P, Lee H, Leek JT, Fallin DM, Feinberg AP, Irizarry RA (2012). “Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies.” International journal of epidemiology, 41(1), 200–209. doi:10.1093/ije/dyr238.

More details are given in:

Aryee MJ, Jaffe AE, Corrada-Bravo H, Ladd-Acosta C, Feinberg AP, Hansen KD, Irizarry RA (2014). “Minfi: A flexible and comprehensive Bioconductor package for the analysis of Infinium DNA Methylation microarrays.” Bioinformatics, 30(10), 1363–1369. doi:10.1093/bioinformatics/btu049.

Corresponding BibTeX entries:

  @Article{bumphunter,
    author = {Andrew E. Jaffe and Peter Murakami and Hwajin Lee and
      Jeffrey T. Leek and Daniele M. Fallin and Andrew P. Feinberg and
      Rafael A. Irizarry},
    title = {Bump hunting to identify differentially methylated regions
      in epigenetic epidemiology studies},
    journal = {International journal of epidemiology},
    year = {2012},
    volume = {41},
    number = {1},
    pages = {200--209},
    doi = {10.1093/ije/dyr238},
    pubmed = {22422453},
  }

  @Article{minfi,
    title = {Minfi: A flexible and comprehensive Bioconductor package
      for the analysis of Infinium DNA Methylation microarrays},
    author = {Martin J. Aryee and Andrew E. Jaffe and Hector
      Corrada-Bravo and Christine Ladd-Acosta and Andrew P. Feinberg
      and Kasper D. Hansen and Rafael A. Irizarry},
    year = {2014},
    journal = {Bioinformatics},
    volume = {30},
    number = {10},
    pages = {1363--1369},
    doi = {10.1093/bioinformatics/btu049},
    pubmed = {24478339},
  }