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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "bugsigdbr" in publications use:'
type: software
license: GPL-3.0-only
title: 'bugsigdbr: R-side access to published microbial signatures from BugSigDB'
version: 1.11.0
doi: 10.1038/s41587-023-01872-y
abstract: The bugsigdbr package implements convenient access to bugsigdb.org from
  within R/Bioconductor. The goal of the package is to facilitate import of BugSigDB
  data into R/Bioconductor, provide utilities for extracting microbe signatures, and
  enable export of the extracted signatures to plain text files in standard file formats
  such as GMT.
authors:
- family-names: Geistlinger
  given-names: Ludwig
  email: ludwig.geistlinger@gmail.com
- family-names: Wokaty
  given-names: Jennifer
  email: jennifer.wokaty@sph.cuny.edu
- family-names: Waldron
  given-names: Levi
  email: lwaldron.research@gmail.com
preferred-citation:
  type: article
  title: BugSigDB captures patterns of differential abundance across a broad range
    of host-associated microbial signatures
  authors:
  - family-names: Geistlinger
    given-names: Ludwig
    email: ludwig.geistlinger@gmail.com
  - family-names: Mirzayi
    given-names: Chloe
  - family-names: Zohra
    given-names: Fatima
  - family-names: Azhar
    given-names: Rimsha
  - family-names: Elsafoury
    given-names: Shaimaa
  - family-names: Grieve
    given-names: Clare
  - family-names: Wokaty
    given-names: Jennifer
    email: jennifer.wokaty@sph.cuny.edu
  - family-names: Gamboa-Tuz
    given-names: Samuel David
  - family-names: Sengupta
    given-names: Pratyay
  - family-names: Hecht
    given-names: Isaac
  - family-names: Ravikrishnan
    given-names: Aarthi
  - family-names: Goncalves
    given-names: Rafael
  - family-names: Franzosa
    given-names: Eric
  - family-names: Raman
    given-names: Karthik
  - family-names: Carey
    given-names: Vincent
  - family-names: Dowd
    given-names: Jennifer
  - family-names: Jones
    given-names: Heidi
  - family-names: Davis
    given-names: Sean
  - family-names: Segata
    given-names: Nicola
  - family-names: Huttenhower
    given-names: Curtis
  - family-names: Waldron
    given-names: Levi
    email: lwaldron.research@gmail.com
  year: '2023'
  journal: Nature Biotechnology
  doi: 10.1038/s41587-023-01872-y
repository: https://bioc.r-universe.dev
repository-code: https://github.com/waldronlab/bugsigdbr
url: https://github.com/waldronlab/bugsigdbr
contact:
- family-names: Geistlinger
  given-names: Ludwig
  email: ludwig.geistlinger@gmail.com