broadSeq

The goal of broadSeq is to do easily RNA-seq data analysis with multiple methods (usually which needs many different input formats). Here the user will provide the expression data as a SummarizedExperiment object and will get results from different methods. This function oriented package will give user freedom to develop customized and reproducible workflow. Additionally, it will also help to quickly evaluate different methods easily.

This is under active development. Please report if you find any bug.

Installation

if (!require("BiocManager"))
    install.packages("BiocManager")
BiocManager::install("broadSeq")

You can install the development version of broadSeq from GitHub with:

# install.packages("devtools")
devtools::install_github("dasroy/broadSeq")

For package documentation

devtools::install_github("dasroy/broadSeq", build_vignettes = TRUE)
browseVignettes(package = "broadSeq")