NEWS

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breakpointR 1.7.2

• Added new function to allow for removal of spikes in read coverage present in composite files.

breakpointR 1.7.1

• Added new deltaW calculator that allows to define multiplication of the original window size to use for deltaW calculations. One can invoke this by setting 'multi.sizes' parameter.

breakpointR 1.2.1

• Added new genotyping method based on binomial probabilities see parameter genoT = 'fisher' or 'binom'; default: 'fisher'

breakpointR 1.1.2

• Fixed bug in hotspotter function
• Improved handling of small chromosomes/contigs
• Fixed bug in masking certain genomic regions (maskRegions param)
• Improved handling of double SCE chromosomes when synchronizing read directionality across cells

breakpointR 0.99.0

• This package implements various functions to find template strand changepoints in Strand-seq data.