Package: branchpointer
Type: Package
Title: Prediction of intronic splicing branchpoints
Version: 1.39.0
Date: 2025-07-22
Author: Beth Signal
Maintainer: Beth Signal <b.signal@garvan.org.au>
Description: Predicts branchpoint probability for sites in intronic
        branchpoint windows. Queries can be supplied as intronic
        regions; or to evaluate the effects of mutations, SNPs.
License: BSD_3_clause + file LICENSE
Depends: caret, R(>= 3.4)
Imports: plyr, kernlab, gbm, stringr, cowplot, ggplot2, biomaRt,
        Biostrings, parallel, utils, stats,
        BSgenome.Hsapiens.UCSC.hg38, rtracklayer, GenomicRanges,
        Seqinfo, IRanges, S4Vectors, data.table
Suggests: knitr, BiocStyle
RoxygenNote: 6.0.1
VignetteBuilder: knitr
biocViews: Software, GenomeAnnotation, GenomicVariation,
        MotifAnnotation
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:45:16 UTC
RemoteUrl: https://github.com/bioc/branchpointer
RemoteRef: HEAD
RemoteSha: 79e9a91a4fef86350200b8b889591ff06b64a8b9
NeedsCompilation: no
Packaged: 2026-07-09 06:08:02 UTC; root