Package: borealis
Type: Package
Title: Bisulfite-seq OutlieR mEthylation At singLe-sIte reSolution
Version: 1.17.0
Authors@R: person(given = "Garrett",
            family = "Jenkinson",
            role = c("aut", "cre"),
            email = "gargar934@gmail.com",
            comment = c(ORCID = "0000-0003-2548-098X"))
Depends: R (>= 4.2.0), Biobase
Imports: doParallel, snow, purrr, plyr, foreach, gamlss, gamlss.dist,
        bsseq, methods, DSS, R.utils, utils, stats, ggplot2, cowplot,
        dplyr, rlang, GenomicRanges
Description: Borealis is an R library performing outlier analysis for
        count-based bisulfite sequencing data. It detectes outlier
        methylated CpG sites from bisulfite sequencing (BS-seq). The
        core of Borealis is modeling Beta-Binomial distributions. This
        can be useful for rare disease diagnoses.
License: GPL-3
Encoding: UTF-8
Suggests: BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics, annotatr,
        tidyr, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db
VignetteBuilder: knitr
biocViews: Sequencing, Coverage, DNAMethylation,
        DifferentialMethylation
Config/pak/sysreqs: make libbz2-dev liblzma-dev libxml2-dev libssl-dev
        xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:58:15 UTC
RemoteUrl: https://github.com/bioc/borealis
RemoteRef: HEAD
RemoteSha: 7bbd4fbc10baba4b64832ef78df75eaaa425f0df
NeedsCompilation: no
Packaged: 2026-07-04 09:42:47 UTC; root
Author: Garrett Jenkinson [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-2548-098X>)
Maintainer: Garrett Jenkinson <gargar934@gmail.com>