To cite bnem in publications use:

  Martin Pirkl, Elisabeth Hand, Dieter Kube, Rainer Spang (2016).
  Analyzing synergistic and non-synergistic interactions in signalling
  pathways using Boolean Nested Effect Model. Bioinformatics (2016) 32
  (6): 893-900

A BibTeX entry for LaTeX users is

  @Article{,
    title = {Analyzing synergistic and non-synergistic interactions in signalling pathways using Boolean Nested Effect Models.},
    author = {Martin Pirkl and Elisabeth Hand and Dieter Kube and Rainer Spang},
    journal = {Bioinformatics},
    year = {2016},
    volume = {32},
    number = {6},
    pages = {893-900},
    url = {http://bioinformatics.oxfordjournals.org/content/32/6/893},
  }

  Martin Pirkl (2016). Indirect inference of synergistic and
  alternative signalling of intracellular pathways. University of
  Regensburg

A BibTeX entry for LaTeX users is

  @Article{,
    title = {Indirect inference of synergistic and alternative signalling of intracellular pathways.},
    author = {Martin Pirkl},
    journal = {University of Regensburg},
    year = {2016},
    url = {http://epub.uni-regensburg.de/34157/},
  }