Encoding: UTF-8
Package: blima
Type: Package
Title: Tools for the preprocessing and analysis of the Illumina
        microarrays on the detector (bead) level
Version: 1.47.0
Date: 2017-09-23
Author: Vojtěch Kulvait
Maintainer: Vojtěch Kulvait <kulvait@gmail.com>
Description: Package blima includes several algorithms for the
        preprocessing of Illumina microarray data. It focuses to the
        bead level analysis and provides novel approach to the quantile
        normalization of the vectors of unequal lengths. It provides
        variety of the methods for background correction including
        background subtraction, RMA like convolution and background
        outlier removal. It also implements variance stabilizing
        transformation on the bead level. There are also implemented
        methods for data summarization. It also provides the methods
        for performing T-tests on the detector (bead) level and on the
        probe level for differential expression testing.
License: GPL-3
LazyLoad: yes
Depends: R(>= 3.3)
Imports: beadarray(>= 2.0.0), Biobase(>= 2.0.0), Rcpp (>= 0.12.8),
        BiocGenerics, grDevices, stats, graphics
LinkingTo: Rcpp
Suggests: xtable, blimaTestingData, BiocStyle, illuminaHumanv4.db,
        lumi, knitr
URL: https://bitbucket.org/kulvait/blima
biocViews: Microarray, Preprocessing, Normalization,
        DifferentialExpression, GeneRegulation, GeneExpression
VignetteBuilder: knitr
Config/pak/sysreqs: libicu-dev libpng-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:39:08 UTC
RemoteUrl: https://github.com/bioc/blima
RemoteRef: HEAD
RemoteSha: 55531c04711c143f808c6469e43910799bf1755b
NeedsCompilation: yes
Packaged: 2026-07-04 08:42:06 UTC; root