To cite package ‘betaHMM’ in publications use:

  Majumdar K, Silva R, Perry A, Watson R, Gorley I, Murphy T, Jaffrezic
  F, Rau A (2024). _betaHMM: A Hidden Markov Model Approach for
  Identifying Differentially Methylated Sites and Regions for
  Beta-Valued DNA Methylation Data_. R package version 1.1.0,
  <https://bioconductor.org/packages/betaHMM>.

A BibTeX entry for LaTeX users is

  @Manual{,
    title = {betaHMM: A Hidden Markov Model Approach for Identifying Differentially
Methylated Sites and Regions for Beta-Valued DNA Methylation
Data},
    author = {Koyel Majumdar and Romina Silva and Antoinette Sabrina Perry and Ronald William Watson and Isobel Claire Gorley and Thomas Brendan Murphy and Florence Jaffrezic and Andrea Rau},
    year = {2024},
    note = {R package version 1.1.0},
    url = {https://bioconductor.org/packages/betaHMM},
  }