To cite package ‘betaHMM’ in publications use:

Majumdar K, Silva R, Perry A, Watson R, Gorley I, Murphy T, Jaffrezic F, Rau A (2026). betaHMM: A Hidden Markov Model Approach for Identifying Differentially Methylated Sites and Regions for Beta-Valued DNA Methylation Data. R package version 1.9.0, https://bioconductor.org/packages/betaHMM.

Corresponding BibTeX entry:

  @Manual{,
    title = {betaHMM: A Hidden Markov Model Approach for Identifying
      Differentially Methylated Sites and Regions for Beta-Valued DNA
      Methylation Data},
    author = {Koyel Majumdar and Romina Silva and Antoinette Sabrina
      Perry and Ronald William Watson and Isobel Claire Gorley and
      Thomas Brendan Murphy and Florence Jaffrezic and Andrea Rau},
    year = {2026},
    note = {R package version 1.9.0},
    url = {https://bioconductor.org/packages/betaHMM},
  }