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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "beer" in publications use:'
type: software
license: MIT
title: 'beer: Bayesian Enrichment Estimation in R'
version: 1.9.0
abstract: BEER implements a Bayesian model for analyzing phage-immunoprecipitation
  sequencing (PhIP-seq) data. Given a PhIPData object, BEER returns posterior probabilities
  of enriched antibody responses, point estimates for the relative fold-change in
  comparison to negative control samples, and more. Additionally, BEER provides a
  convenient implementation for using edgeR to identify enriched antibody responses.
authors:
- family-names: Chen
  given-names: Athena
  email: achen70@jhu.edu
  orcid: https://orcid.org/0000-0001-6900-2264
- family-names: Scharpf
  given-names: Rob
  email: rscharpf@jhu.edu
- family-names: Ruczinski
  given-names: Ingo
  email: ingo@jhu.edu
preferred-citation:
  type: article
  title: Detecting Antibody Reactivities in Phage ImmunoPrecipitation Sequencing Data
  authors:
  - family-names: Chen
    given-names: Athena
    email: achen70@jhu.edu
    orcid: https://orcid.org/0000-0001-6900-2264
  - family-names: Kammers
    given-names: Kai
  - family-names: Larman
    given-names: H. Benjamin
  - family-names: Scharpf
    given-names: Robert B.
  - family-names: Ruczinski
    given-names: Ingo
    email: ingo@jhu.edu
  journal: bioRxiv
  year: '2022'
  url: https://www.biorxiv.org/content/early/2022/01/21/2022.01.19.476926
repository: https://bioc.r-universe.dev
repository-code: https://github.com/athchen/beer
url: https://github.com/athchen/beer/
contact:
- family-names: Chen
  given-names: Athena
  email: achen70@jhu.edu
  orcid: https://orcid.org/0000-0001-6900-2264