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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "batchelor" in publications use:'
type: software
license: GPL-3.0-only
title: 'batchelor: Single-Cell Batch Correction Methods'
version: 1.21.1
doi: 10.1038/nbt.4091
abstract: Implements a variety of methods for batch correction of single-cell (RNA
  sequencing) data. This includes methods based on detecting mutually nearest neighbors,
  as well as several efficient variants of linear regression of the log-expression
  values. Functions are also provided to perform global rescaling to remove differences
  in depth between batches, and to perform a principal components analysis that is
  robust to differences in the numbers of cells across batches.
authors:
- family-names: Lun
  given-names: Aaron
  email: infinite.monkeys.with.keyboards@gmail.com
preferred-citation:
  type: article
  title: Batch effects in single-cell RNA-sequencing data are corrected by matching
    mutual nearest neighbors
  authors:
  - family-names: Haghverdi
    given-names: Laleh
  - family-names: Lun
    given-names: Aaron T. L.
  - family-names: Morgan
    given-names: Michael D.
  - family-names: Marioni
    given-names: John C.
  journal: Nat. Biotechnol.
  year: '2018'
  volume: '36'
  issue: '5'
  doi: 10.1038/nbt.4091
  start: '421'
  end: '427'
repository: https://bioc.r-universe.dev
date-released: '2024-07-03'
contact:
- family-names: Lun
  given-names: Aaron
  email: infinite.monkeys.with.keyboards@gmail.com