Package: batchelor
Version: 1.29.0
Date: 2026-04-09
Title: Single-Cell Batch Correction Methods
Authors@R: c(person("Aaron", "Lun", role = c("aut", "cre"), email = "infinite.monkeys.with.keyboards@gmail.com"),
    person("Laleh", "Haghverdi", role="ctb"))
Depends: SingleCellExperiment
Imports: SummarizedExperiment, S4Vectors, BiocGenerics, Rcpp, stats,
        methods, utils, igraph, BiocNeighbors, BiocSingular, Matrix,
        SparseArray, DelayedArray (>= 0.31.5), DelayedMatrixStats,
        BiocParallel, scuttle, ResidualMatrix, ScaledMatrix, beachmat
Suggests: testthat, BiocStyle, knitr, rmarkdown, scran, scater,
        bluster, scRNAseq
biocViews: Sequencing, RNASeq, Software, GeneExpression,
        Transcriptomics, SingleCell, BatchEffect, Normalization
LinkingTo: Rcpp
Description: Implements a variety of methods for batch correction of
        single-cell (RNA sequencing) data. This includes methods based
        on detecting mutually nearest neighbors, as well as several
        efficient variants of linear regression of the log-expression
        values. Functions are also provided to perform global rescaling
        to remove differences in depth between batches, and to perform
        a principal components analysis that is robust to differences
        in the numbers of cells across batches.
License: GPL-3
NeedsCompilation: yes
VignetteBuilder: knitr
SystemRequirements: C++11
RoxygenNote: 7.3.2
Config/pak/sysreqs: libglpk-dev libxml2-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:49:53 UTC
RemoteUrl: https://github.com/bioc/batchelor
RemoteRef: HEAD
RemoteSha: 165c212df5312de6da18dc0a2b78929beaffc812
Packaged: 2026-06-23 15:36:33 UTC; root
Author: Aaron Lun [aut, cre],
  Laleh Haghverdi [ctb]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>