# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "basecallQC" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'basecallQC: Working with Illumina Basecalling and Demultiplexing input and
  output files'
version: 1.29.0
doi: 10.32614/CRAN.package.basecallQC
abstract: The basecallQC package provides tools to work with Illumina bcl2Fastq (versions
  >= 2.1.7) software.Prior to basecalling and demultiplexing using the bcl2Fastq software,
  basecallQC functions allow the user to update Illumina sample sheets from versions
  <= 1.8.9 to >= 2.1.7 standards, clean sample sheets of common problems such as invalid
  sample names and IDs, create read and index basemasks and the bcl2Fastq command.
  Following the generation of basecalled and demultiplexed data, the basecallQC packages
  allows the user to generate HTML tables, plots and a self contained report of summary
  metrics from Illumina XML output files.
authors:
- family-names: Carroll
  given-names: Thomas
  email: tc.infomatics@gmail.com
- family-names: Dore
  given-names: Marian
repository: https://bioc.r-universe.dev
commit: db9625335c17bbc73bff35cfdbe96d30f85f67c8
contact:
- family-names: Carroll
  given-names: Thomas
  email: tc.infomatics@gmail.com