Package: bandle Type: Package Title: An R package for the Bayesian analysis of differential subcellular localisation experiments Version: 1.17.0 Authors@R: c(person(family = "Crook", given = "Oliver M.", email = "oliver.crook@stats.ox.ac.uk", comment = c(ORCID = "0000-0001-5669-8506"), role = c("aut", "cre")), person(family = "Breckels", given = "Lisa", email = "lms79@cam.ac.uk", comment = c(ORCID = "0000-0001-8918-7171"), role = c("aut"))) Description: The Bandle package enables the analysis and visualisation of differential localisation experiments using mass-spectrometry data. Experimental methods supported include dynamic LOPIT-DC, hyperLOPIT, Dynamic Organellar Maps, Dynamic PCP. It provides Bioconductor infrastructure to analyse these data. License: Artistic-2.0 Encoding: UTF-8 Depends: R (>= 4.1), S4Vectors, Biobase, MSnbase, pRoloc Imports: Rcpp (>= 1.0.4.6), pRolocdata, lbfgs, ggplot2, dplyr, plyr, knitr, methods, BiocParallel, robustbase, BiocStyle, ggalluvial, ggrepel, tidyr, circlize, graphics, stats, utils, grDevices, rlang, RColorBrewer, gtools, gridExtra, coda (>= 0.19-4) Suggests: testthat, interp, fields, pheatmap, viridis, rmarkdown, spelling VignetteBuilder: knitr LinkingTo: Rcpp, RcppArmadillo, BH Roxygen: list(markdown=TRUE) RoxygenNote: 7.3.2 biocViews: Bayesian, Classification, Clustering, ImmunoOncology, QualityControl,DataImport, Proteomics, MassSpectrometry BugReports: https://github.com/ococrook/bandle/issues URL: http://github.com/ococrook/bandle Language: en-US Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev libuv1-dev libxml2-dev libnetcdf-dev libssl-dev zlib1g-dev Repository: https://bioc.r-universe.dev Date/Publication: 2026-04-28 12:58:10 UTC RemoteUrl: https://github.com/bioc/bandle RemoteRef: HEAD RemoteSha: e1803fe86644aa997c862db7183b37405bd06544 NeedsCompilation: yes Packaged: 2026-07-03 18:22:23 UTC; root Author: Oliver M. Crook [aut, cre] (ORCID: ), Lisa Breckels [aut] (ORCID: ) Maintainer: Oliver M. Crook