To cite package ‘ballgown’ in publications use:

  Fu J, Frazee AC, Collado-Torres L, Jaffe AE, Leek JT (2024).
  _ballgown: Flexible, isoform-level differential expression analysis_.
  R package version 2.37.0,
  <https://bioconductor.org/packages/ballgown>.

A BibTeX entry for LaTeX users is

  @Manual{,
    title = {ballgown: Flexible, isoform-level differential expression analysis},
    author = {Jack Fu and Alyssa C. Frazee and Leonardo Collado-Torres and Andrew E. Jaffe and Jeffrey T. Leek},
    year = {2024},
    note = {R package version 2.37.0},
    url = {https://bioconductor.org/packages/ballgown},
  }