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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "awst" in publications use:'
type: software
license: MIT
title: 'awst: Asymmetric Within-Sample Transformation'
version: 1.13.0
doi: 10.1093/bioinformatics/btab091
identifiers:
- type: doi
  value: 10.32614/CRAN.package.awst
abstract: 'We propose an Asymmetric Within-Sample Transformation (AWST) to regularize
  RNA-seq read counts and reduce the effect of noise on the classification of samples.
  AWST comprises two main steps: standardization and smoothing. These steps transform
  gene expression data to reduce the noise of the lowly expressed features, which
  suffer from background effects and low signal-to-noise ratio, and the influence
  of the highly expressed features, which may be the result of amplification bias
  and other experimental artifacts.'
authors:
- family-names: Risso
  given-names: Davide
  email: risso.davide@gmail.com
  orcid: https://orcid.org/0000-0001-8508-5012
- family-names: Pagnotta
  given-names: Stefano
  email: smpagnotta@gmail.com
  orcid: https://orcid.org/0000-0002-8298-9777
preferred-citation:
  type: article
  title: Per-sample standardization and asymmetric winsorization lead to accurate
    clustering of RNA-seq expression profiles
  authors:
  - family-names: Risso
    given-names: Davide
    email: risso.davide@gmail.com
    orcid: https://orcid.org/0000-0001-8508-5012
  - family-names: Pagnotta
    given-names: Stefano Maria
  year: '2021'
  journal: Bioinformatics
  doi: 10.1093/bioinformatics/btab091
repository: https://bioc.r-universe.dev
repository-code: https://github.com/drisso/awst
commit: 398c0ee68d1690bf5d8f5c2e85e5d973052b5b11
url: https://github.com/drisso/awst
contact:
- family-names: Risso
  given-names: Davide
  email: risso.davide@gmail.com
  orcid: https://orcid.org/0000-0001-8508-5012