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# CITATION file created with {cffr} R package
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cff-version: 1.2.0
message: 'To cite package "augere.solo" in publications use:'
type: software
license: MIT
title: 'augere.solo: Automatic Generation of Single-Cell Analyses'
version: 0.99.3
doi: 10.32614/CRAN.package.augere.solo
abstract: Implements pipelines for generating single-cell analysis reports in the
  augere framework. This uses scrapper to execute routine steps such as quality control,
  normalization, feature selection, clustering and marker detection. We also implement
  a pipeline for automatic cell type annotation against a labelled reference with
  SingleR. Each pipeline function generates a self-contained Rmarkdown report with
  all of the steps required to reproduce its analysis.
authors:
- family-names: Lun
  given-names: Aaron
  email: infinite.monkeys.with.keyboards@gmail.com
  orcid: https://orcid.org/0000-0002-3564-4813
repository: https://bioc.r-universe.dev
repository-code: https://github.com/augere-bioinfo/augere.solo
commit: 51e31e9991745bcabbb31b2e9fa25407216f9546
url: https://github.com/augere-bioinfo/augere.solo
date-released: '2026-04-11'
contact:
- family-names: Lun
  given-names: Aaron
  email: infinite.monkeys.with.keyboards@gmail.com
  orcid: https://orcid.org/0000-0002-3564-4813