NEWS

---

atacInferCnv 0.99.6

• Updates for Bioconductor submission: * Add tests for SingleCellExperiment support * Fix issues with using file.path

atacInferCnv 0.99.5

• Updates for Bioconductor submission: * Add support for SingleCellExperiment as input * Re-wrote plots in ggplot format * Fix issues with using file.path
• Updates for Bioconductor submission: * Add output of infercnv object to documentation * Add ORCID to DESCRIPTION, clean README * Fix text typos, other minor fixes

atacInferCnv 0.99.3

• Updates for Bioconductor submission: * Fix atacInferCnv log output control

atacInferCnv 0.99.2

• Updates for Bioconductor submission: * Add support for plot to save to file * Allow to contro output as verbose * Clean dependencies * Updates in documentation: details, example plots * Updates to testthat: extension of tests * Updates to DESCRIPTION

atacInferCnv 0.99.1

• Fix warning issue takes too long for building the package by including smaller test dataset
• Use Signac/Seurat analysis as option (TRUE by default)

atacInferCnv 0.99.0

• Prepare for Bioconductor submission