Package: atacInferCnv
Type: Package
Title: Call CNV from single cell ATAC-seq data based on InferCNV
        adaptation
Version: 1.1.0
Authors@R: c( person("Konstantin", "Okonechnikov",email = "k.okonechnikov@gmail.com", role = c("aut","cre"), comment=c(ORCID="0000-0002-3409-2340")), person("Supat", "Thongjuea", email = "supat.thongjuea@kitz-heidelberg.de", role = c("aut","fnd")) )
Description: The package prepares input scATAC-seq data and adapts for
        copy number variance profiling with InferCNV package usage. It
        has also various paramters to control the analysis (e.g.
        external normal reference usage, meta-cells, bin size, etc) and
        custom plot visualizations.
License: GPL-3 + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.5.0),utils
Imports: infercnv (>= 1.3.1), Signac, Seurat, GenomicRanges,
        GenomeInfoDb, S4Vectors, config, stringr, ggplot2,
        SummarizedExperiment, SingleCellExperiment, Rcpp
biocViews: Epigenetics, Sequencing, CopyNumberVariation,
        SingleCell,ImmunoOncology
VignetteBuilder: knitr
URL: https://github.com/kokonech/atacInferCNV
BugReports: https://github.com/kokonech/atacInferCNV/issues
Suggests: testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown
RoxygenNote: 7.3.3
LinkingTo: Rcpp,RcppEigen
Config/testthat/edition: 3
Config/pak/sysreqs: cmake libglpk-dev make jags libbz2-dev libicu-dev
        liblzma-dev libpng-dev libuv1-dev libxml2-dev libssl-dev
        python3 xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:07:12 UTC
RemoteUrl: https://github.com/bioc/atacInferCnv
RemoteRef: HEAD
RemoteSha: 0347acd24dadb5847dbca2f409b4249a21b61249
NeedsCompilation: yes
Packaged: 2026-05-29 06:21:53 UTC; root
Author: Konstantin Okonechnikov [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3409-2340>),
  Supat Thongjuea [aut, fnd]
Maintainer: Konstantin Okonechnikov <k.okonechnikov@gmail.com>