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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "asuri" in publications use:'
type: software
license: LGPL-3.0-only
title: 'asuri: Analysis of SUrvival and RIsk prediction in patients based on gene
  signatures'
version: 1.1.0
doi: 10.1093/BIOADV/VBAD037
identifiers:
- type: doi
  value: 10.32614/CRAN.package.asuri
abstract: The asuri (Analysis of SUrvival and patients RIsk prediction based on gene
  signatures) package discovers marker genes that are related to risk prediction capabilities
  and to a clinical variable of interest. It uses two main steps, including subsampling
  glmnet and unicox. The package implements robust functions to discover survival
  markers related to a clinical phenotype and to predict a risk score, allowing to
  study the patient's risk based on the gene signatures. Several plots are provided
  to visualise the relevance of the genes, the risk score, and patient stratification,
  as well as a robust version of the Kaplan-Meier curves.
authors:
- family-names: Berral-Gonzalez
  given-names: Alberto
  email: aberralgonzalez@gmail.com
  orcid: https://orcid.org/0000-0001-8388-6051
- family-names: Sanchez-Martin
  given-names: María
  email: msanmar@usal.es
  orcid: https://orcid.org/0009-0006-5549-6113
- family-names: Bueno-Fortes
  given-names: Santiago
  orcid: https://orcid.org/0000-0001-7141-2860
- family-names: Alonso-Moreda
  given-names: Natalia
  orcid: https://orcid.org/0000-0002-2347-5127
- family-names: Sanchez-Santos
  given-names: Jose Manuel
  orcid: https://orcid.org/0000-0002-7434-7598
- family-names: Martin-Merino Acera
  given-names: Manuel
  orcid: https://orcid.org/0000-0002-5914-2332
- family-names: De Las Rivas
  given-names: Javier
  email: jrivas@usal.es
  orcid: https://orcid.org/0000-0002-0984-9946
preferred-citation:
  type: article
  title: Identification of a gene expression signature associated with breast cancer
    survival and risk that improves clinical genomic platforms
  authors:
  - family-names: Bueno-Fortes
    given-names: S
  - family-names: Berral-Gonzalez
    given-names: A
  - family-names: Sanchez-Santos
    given-names: JM
  - family-names: Martin-Merino
    given-names: M
  - family-names: De Las Rivas
    given-names: J
  journal: Bioinformatics Advances
  year: '2023'
  volume: '3'
  issue: '1'
  doi: 10.1093/BIOADV/VBAD037
  issn: '26350041'
  publisher:
    name: Oxford Academic
  start: vbad037
repository: https://bioc.r-universe.dev
repository-code: https://github.com/jdelasrivas-lab/asuri
commit: dfe8e2e9b229ff3540d19c28ed0b5e9e5e95bc31
url: https://github.com/jdelasrivas-lab/asuri
date-released: '2024-04-03'
contact:
- family-names: Berral-Gonzalez
  given-names: Alberto
  email: aberralgonzalez@gmail.com
  orcid: https://orcid.org/0000-0001-8388-6051