Please cite aroma.light one or more of approprite reference below

H. Bengtsson, P. Neuvial and T.P. Speed. TumorBoost: Normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays, BMC Bioinformatics, 2010

H. Bengtsson, A. Ray, P. Spellman and T.P. Speed. A single-sample method for normalizing and combining full-resolutioncopy numbers from multiple platforms, labs and analysis methods, Bioinformatics, 2009

H. Bengtsson; K. Simpson; J. Bullard; K. Hansen. aroma.affymetrix: A generic framework in R for analyzing small to very large Affymetrix data sets in bounded memory, Tech Report 745, Department of Statistics, University of California, Berkeley, February 2008

H. Bengtsson, R. Irizarry, B. Carvalho, & T.P. Speed. Estimation and assessment of raw copy numbers at the single locus level, Bioinformatics, 2008

H. Bengtsson & O. Hössjer. Methodological study of affine transformations of gene expressiondata with proposed robust non-parametric multi-dimensional normalization method, BMC Bioinformatics, 2006

H. Bengtsson, G. Jönsson & J. Vallon-Christersson. Calibration and assessment of channel-specific biases in microarray data with extended dynamical range, BMC Bioinformatics, 2004

H. Bengtsson. aroma - An R Object-oriented Microarray Analysis environment, Preprint 2004:18, Centre for Mathematical Sciences, Lund University, 2004

Corresponding BibTeX entries:

  @Article{,
    author = {H. Bengtsson and Pierre Neuvial and Terence P Speed},
    title = {TumorBoost: Normalization of allele-specific tumor copy
      numbers from a single pair of tumor-normal genotyping
      microarrays},
    journal = {BMC Bioinformatics},
    year = {2010},
    month = {May},
    volume = {11},
    number = {245},
    doi = {10.1186/1471-2105-11-245},
    url =
      {https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-11-245},
  }

  @Article{,
    author = {Henrik Bengtsson and Amrita Ray and Paul Spellman and
      Terence P Speed},
    title = {A single-sample method for normalizing and combining
      full-resolutioncopy numbers from multiple platforms, labs and
      analysis methods},
    journal = {Bioinformatics},
    year = {2009},
    volume = {25},
    number = {7},
    doi = {10.1093/bioinformatics/btp074},
    url =
      {https://bioinformatics.oxfordjournals.org/cgi/content/full/25/7/861},
  }

  @TechReport{,
    author = {H. Bengtsson and K. Simpson and J. Bullard and K.
      Hansen},
    title = {{aroma.affymetrix}: A generic framework in {R} for
      analyzing small to very large {Affymetrix} data sets in bounded
      memory},
    institution = {Department of Statistics, University of California,
      Berkeley},
    year = {2008},
    month = {February},
    number = {745},
  }

  @Article{,
    author = {Henrik Bengtsson and R. Irizarry and B. Carvalho and T.P.
      Speed},
    title = {Estimation and assessment of raw copy numbers at the
      single locus level},
    journal = {Bioinformatics},
    year = {2008},
    volume = {24},
    number = {6},
    url =
      {https://bioinformatics.oxfordjournals.org/cgi/content/full/24/6/759},
  }

  @Article{,
    author = {H. Bengtsson and O. H{"o}ssjer},
    title = {Methodological study of affine transformations of gene
      expressiondata with proposed robust non-parametric
      multi-dimensional normalization method},
    journal = {BMC Bioinformatics},
    year = {2006},
    volume = {7},
    number = {100},
    doi = {10.1186/1471-2105-7-100},
    url =
      {https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-7-100},
  }

  @Article{,
    author = {H. Bengtsson and G. J"{o}nsson and J.
      Vallon-Christersson},
    title = {Calibration and assessment of channel-specific biases in
      microarray data with extended dynamical range},
    journal = {BMC Bioinformatics},
    year = {2004},
    volume = {5},
    number = {177},
    doi = {10.1186/1471-2105-5-177},
    url =
      {https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-5-177},
  }

  @TechReport{,
    author = {H. Bengtsson},
    title = {{aroma} - {A}n {R} {O}bject-oriented {M}icroarray
      {A}nalysis environment},
    type = {Preprint in Mathematical Sciences},
    institution = {Mathematical Statistics, Centre for Mathematical
      Sciences, Lund University, Sweden},
    year = {2004},
    number = {18},
    url = {https://lup.lub.lu.se/search/publication/929031},
  }