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  "Title": "Create rapid visualizations of RNAseq data in R",
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      "title": "ViDGER Supplementary Material",
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      "engine": "knitr::rmarkdown",
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        "Example S1: Installation and data examples",
        "An overview of the data used",
        "Example S2: Creating box plots",
        "With Cuffdiff",
        "With DESeq2",
        "With edgeR",
        "Aesthetic variants to box plots",
        "box variant",
        "violin variant",
        "boxdot variant",
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        "notch variant",
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        "Color variant example 1",
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        "Color variant example 3",
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        "Example S4: Creating scatter plot matrices",
        "Example S5: Creating differential gene expression matrices",
        "Grey-scale DEG matrices",
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        "Example S7: Creating MA plot matrices",
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        "Example S11: Highlighting data points",
        "Overview",
        "Highlighting with vsScatterPlot()",
        "Highlighting with vsMAPlot()",
        "Highlighting with vsVolcano()",
        "Highlighting with vsFourWay()",
        "Example S12: Extracting datasets from plots",
        "The data extraction process",
        "Return the plot",
        "Example S13: Changing text sizes",
        "What exactly can you manipulate?",
        "Method S1: Determining data point shape and size changes",
        "Method S2: Determining function performance",
        "Scatterplots",
        "Scatterplot matrices",
        "Box plots",
        "Differential gene expression matrices",
        "Volcano plots",
        "Volcano plot matrices",
        "MA plots",
        "MA matrices",
        "Four way plots",
        "Session info"
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