{
  "_id": "6a197b75acfb0bcc41df5e4f",
  "Package": "vbmp",
  "Type": "Package",
  "Title": "Variational Bayesian Multinomial Probit Regression",
  "Version": "1.81.0",
  "Author": "Nicola Lama <nicola.lama@unina2.it>, Mark Girolami\n<girolami@dcs.gla.ac.uk>",
  "Maintainer": "Nicola Lama <nicola.lama@unina2.it>",
  "Description": "Variational Bayesian Multinomial Probit Regression with\nGaussian Process Priors. It estimates class membership\nposterior probability employing variational and sparse\napproximation to the full posterior. This software also\nincorporates feature weighting by means of Automatic Relevance\nDetermination.",
  "License": "GPL (>= 2)",
  "LazyLoad": "Yes",
  "URL": "http://bioinformatics.oxfordjournals.org/cgi/content/short/btm535v1",
  "biocViews": "Classification",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:32:28 UTC",
  "RemoteUrl": "https://github.com/bioc/vbmp",
  "RemoteRef": "HEAD",
  "RemoteSha": "5a4fa80caf82a4524456e7f84bbbffa9d4e824c2",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-29 10:01:12 UTC",
    "User": "root"
  },
  "MD5sum": "bc262ce6b015ca67e4127172eca5b758",
  "_user": "bioc",
  "_type": "src",
  "_file": "vbmp_1.81.0.tar.gz",
  "_fileid": "8477138ef1c3154b33fbd573390414b23ec7d1f3812c175feec80dac3fbeb531",
  "_filesize": 1838402,
  "_sha256": "8477138ef1c3154b33fbd573390414b23ec7d1f3812c175feec80dac3fbeb531",
  "_created": "2026-05-29T10:01:12.000Z",
  "_published": "2026-05-29T11:41:41.001Z",
  "_jobs": [
    {
      "job": 78479504927,
      "time": 126,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7288141543"
    },
    {
      "job": 78479505024,
      "time": 108,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7288136186"
    },
    {
      "job": 78479505033,
      "time": 124,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7288140817"
    },
    {
      "job": 78479504973,
      "time": 91,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7289802117"
    },
    {
      "job": 78479505062,
      "time": 68,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7289812567"
    },
    {
      "job": 78479034127,
      "time": 178,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7288104035"
    },
    {
      "job": 78479505109,
      "time": 83,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7288129115"
    },
    {
      "job": 78479504996,
      "time": 66,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7288124119"
    },
    {
      "job": 78479505049,
      "time": 62,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7288122913"
    },
    {
      "job": 78479505059,
      "time": 78,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7288128341"
    }
  ],
  "_bioccheck": {
    "error": 2,
    "warning": 5,
    "note": 18
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26630841270",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/vbmp",
  "_commit": {
    "id": "5a4fa80caf82a4524456e7f84bbbffa9d4e824c2",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379548
  },
  "_maintainer": {
    "name": "Nicola Lama",
    "email": "nicola.lama@unina2.it"
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "Biobase",
      "version": ">= 2.5.5",
      "role": "Suggests"
    },
    {
      "package": "statmod",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.81.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.80.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "classification"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 528,
    "source": "https://www.bioconductor.org/packages/stats/bioc/vbmp"
  },
  "_searchresults": 3,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/vbmp.html",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.2.0",
      "date": "2007-06-22"
    },
    {
      "version": "1.3.0",
      "date": "2007-07-24"
    },
    {
      "version": "1.12.0",
      "date": "2009-05-10"
    },
    {
      "version": "1.14.0",
      "date": "2009-11-13"
    },
    {
      "version": "1.16.0",
      "date": "2010-05-01"
    },
    {
      "version": "1.18.0",
      "date": "2010-10-26"
    },
    {
      "version": "1.20.0",
      "date": "2011-04-26"
    }
  ],
  "_exports": [
    "covParams",
    "plotDiagnostics",
    "predClass",
    "predError",
    "predictCPP",
    "predLik",
    "vbmp"
  ],
  "_datasets": [
    {
      "name": "BRCA12",
      "title": "BRCA tumour dataset",
      "object": "BRCA12",
      "file": "BRCA12.RData",
      "class": [
        "ExpressionSet"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "BRCA12",
      "title": "BRCA tumour dataset",
      "topics": [
        "BRCA12"
      ]
    },
    {
      "page": "covParams",
      "title": "VBMP covariance functions parameters",
      "topics": [
        "covParams"
      ]
    },
    {
      "page": "lowerBound",
      "title": "VBMP Lower bound estimate",
      "topics": [
        "lowerBound"
      ]
    },
    {
      "page": "plotDiagnostics",
      "title": "VBMP covariance diagnostics plot",
      "topics": [
        "plotDiagnostics"
      ]
    },
    {
      "page": "predClass",
      "title": "VBMP Predicted class values",
      "topics": [
        "predClass"
      ]
    },
    {
      "page": "predError",
      "title": "Out-of-Sample VBMP Prediction error",
      "topics": [
        "predError"
      ]
    },
    {
      "page": "predictCPP",
      "title": "VBMP predict functions parameters",
      "topics": [
        "predictCPP"
      ]
    },
    {
      "page": "predLik",
      "title": "VBMP predictive likelihood estimate",
      "topics": [
        "predLik"
      ]
    },
    {
      "page": "vbmp",
      "title": "Variational Bayesian Multinomial Probit Regression with Gaussian Process Priors.",
      "topics": [
        "vbmp"
      ]
    }
  ],
  "_rundeps": [],
  "_vignettes": [
    {
      "source": "vbmp.Rnw",
      "filename": "vbmp.pdf",
      "title": "vbmp Tutorial",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2013-11-01 20:01:26",
      "modified": "2013-11-01 20:01:26",
      "commits": 1
    }
  ],
  "_score": 3.3010299956639813,
  "_indexed": true,
  "_nocasepkg": "vbmp",
  "_universes": [
    "bioc"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.81.0",
      "date": "2026-05-29T10:03:04.000Z",
      "distro": "noble",
      "commit": "5a4fa80caf82a4524456e7f84bbbffa9d4e824c2",
      "fileid": "edfbc17b3883f2f828a861204f05629483abef68b7d75cd9e3815f990ddf112f",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26630841270"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.81.0",
      "date": "2026-05-29T10:03:19.000Z",
      "distro": "noble",
      "commit": "5a4fa80caf82a4524456e7f84bbbffa9d4e824c2",
      "fileid": "96e86713b9ca9eca482edbf327f049648bc87eb1516128f716f8f55f980bebe1",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26630841270"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.81.0",
      "date": "2026-05-29T11:40:38.000Z",
      "commit": "5a4fa80caf82a4524456e7f84bbbffa9d4e824c2",
      "fileid": "587dea001f5feff2723d610d4ee453964eab2615d82daa5a48d79b020506ccb7",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26630841270"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.81.0",
      "date": "2026-05-29T11:41:17.000Z",
      "commit": "5a4fa80caf82a4524456e7f84bbbffa9d4e824c2",
      "fileid": "06dbe60710348fd9ae616d52cd4bb16081a8ec833b3db87f759cb227a66d8b80",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26630841270"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.81.0",
      "date": "2026-05-29T10:02:52.000Z",
      "commit": "5a4fa80caf82a4524456e7f84bbbffa9d4e824c2",
      "fileid": "6e96cecc17889c4acce6431ff7990ee955f4a48055e174677d6e5da89a3a5c68",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26630841270"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.81.0",
      "date": "2026-05-29T10:02:19.000Z",
      "commit": "5a4fa80caf82a4524456e7f84bbbffa9d4e824c2",
      "fileid": "23c77aec14d9d2dd34059e0ff1c3fd9781b1b591fcd7e46e4975669c05ad62d6",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26630841270"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.81.0",
      "date": "2026-05-29T10:02:14.000Z",
      "commit": "5a4fa80caf82a4524456e7f84bbbffa9d4e824c2",
      "fileid": "3cef80cbd5ae78dd6ac236547a7e02e0ffdecccbd3d13c199a6a4e35aa50f84e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26630841270"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.81.0",
      "date": "2026-05-29T10:02:33.000Z",
      "commit": "5a4fa80caf82a4524456e7f84bbbffa9d4e824c2",
      "fileid": "532255a0fc69dd19a4a5ced02092f667ba3d95ce1d83d853381c058e9cfef56b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26630841270"
    }
  ]
}