{ "_id": "6aca1538fe5cc25786e8477d", "Package": "tweeDEseqCountData", "Title": "RNA-seq count data employed in the vignette of the tweeDEseq\npackage", "Description": "RNA-seq count data from Pickrell et al. (2010) employed to\nillustrate the use of the Poisson-Tweedie family of\ndistributions with the tweeDEseq package.", "Version": "1.51.0", "Authors@R": "c(person(\"Dolors\", \"Pelegri-Siso\", ,\"dolors.pelegri@isglobal.org\",\nrole = c(\"aut\", \"cre\"),comment = c(ORCID = \"0000-0002-5993-3003\")),\nperson(\"Juan R.\", \"Gonzalez\", ,\"juanr.gonzalez@isglobal.org\",\nrole = \"aut\", comment = c(ORCID = \"0000-0003-3267-2146\")),\nperson(\"Mikel\", \"Esnaola\", ,\"mesnaola@creal.cat\", role = \"aut\"),\nperson(\"Robert\", \"Castelo\", ,\"robert.castelo@upf.edu\", role = \"aut\"))", "biocViews": "Genome, Homo_sapiens_Data, RNASeqData", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "RoxygenNote": "7.1.2", "VignetteBuilder": "knitr", "LazyLoad": "yes", "BugReports": "https://github.com/isglobal-brge/tweeDEseqCountData/issues", "URL": "https://github.com/isglobal-brge/tweeDEseqCountData/", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:24:25 UTC", "RemoteUrl": "https://github.com/bioc/tweeDEseqCountData", "RemoteRef": "HEAD", "RemoteSha": "92081a4f2beaa5f9ce829eabf13cd8f7fd9ae3cc", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-10 10:30:37 UTC", "User": "root" }, "Author": "Dolors Pelegri-Siso [aut, cre] (ORCID:\n),\nJuan R. Gonzalez [aut] (ORCID: ),\nMikel Esnaola [aut],\nRobert Castelo [aut]", "Maintainer": "Dolors Pelegri-Siso ", "_user": "bioc", "_type": "src", "_file": "tweeDEseqCountData_1.51.0.tar.gz", "_fileid": "https://r2.ropensci.org/129ac972e63d9e49e9ddf2b427dc57d1d8022d6515b247fc216ff60755f9c8c2", "_filesize": 29602669, "_sha256": "129ac972e63d9e49e9ddf2b427dc57d1d8022d6515b247fc216ff60755f9c8c2", "_expires": "2027-01-18T10:36:38.000Z", "_created": "2026-10-10T10:30:37.000Z", "_published": "2026-10-10T10:36:40.825Z", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/38044964510", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 1, "warning": 3, "note": 6 }, "_upstream": "https://github.com/bioc/tweeDEseqCountData", "_commit": { "id": "92081a4f2beaa5f9ce829eabf13cd8f7fd9ae3cc", "author": "lshep ", "committer": "lshep ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379065 }, "_maintainer": { "name": "Dolors Pelegri-Siso", "email": "dolors.pelegri@isglobal.org", "login": "isglobal-exposomehub", "description": "", "uuid": 79249071, "orcid": "0000-0002-5993-3003" }, "_distro": "resolute", "_jobs": [ { "job": 114193358140, "time": 128, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "11667567955" }, { "job": 114193358207, "time": 167, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "11667268448" }, { "job": 114193358146, "time": 242, "config": "linux-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "11667648023" }, { "job": 114192587362, "time": 266, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11667512763" } ], "_registered": true, "_dependencies": [ { "package": "Biobase", "role": "Depends" }, { "package": "R", "version": ">= 4.3.0", "role": "Depends" }, { "package": "knitr", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.51.0", "bioc": "3.24", "repository": "data/experiment" }, { "branch": "release", "version": "1.50.0", "bioc": "3.23", "repository": "data/experiment" } ], "_topics": [ "genome", "homo_sapiens_data", "rnaseqdata", "datapkg" ], "_stars": 0, "_contributors": [ { "user": "isglobal-brge", "count": 2, "uuid": 22591681 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_devurl": "https://github.com/isglobal-brge/tweedeseqcountdata", "_searchresults": 45, "_datapkg": true, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/tweeDEseqCountData.html" ], "_cranurl": false, "_exports": [], "_datasets": [ { "name": "annotEnsembl63", "title": "Annotation data from Ensemble Release 63", "object": "annotEnsembl63", "file": "annotEnsembl63.rda", "class": [ "data.frame" ], "fields": [ "Symbol", "Chr", "Start", "End", "EntrezID", "Description", "Length", "GCcontent" ], "rows": 50451, "table": true, "tojson": true }, { "name": "hkGenes", "title": "Housekeeping Genes from Eisenberg and Levanon (2003)", "object": "hkGenes", "file": "hkGenes.rda", "class": [ "character" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "tweeDEseqCountData-package", "title": "RNA-seq count data employed in the vignette of the tweeDEseq package", "topics": [ "tweeDEseqCountData-package" ] }, { "page": "annotEnsembl63", "title": "Annotation data from Ensemble Release 63", "topics": [ "annotEnsembl63" ] }, { "page": "cheung", "title": "RNA-seq count data from Cheung et al. (2010)", "topics": [ "cheung", "cheung.eset" ] }, { "page": "commonPickrell1Huang", "title": "Matching microarray and RNA-seq data from human lymphoblastoid cell lines", "topics": [ "commonPickrell1Huang", "cqnNormCommon", "cqnNormCommonSamples", "huangArrayRMAnoBatchCommon.eset", "huangArrayRMAnoBatchCommonSamples.eset", "pickrell1countsCommon.eset", "pickrell1countsCommonSamples.eset", "pickrell1countsCQNcommon.eset", "pickrell1countsCQNcommonSamples.eset" ] }, { "page": "genderGenes", "title": "Genes with documented sex-specific expression", "topics": [ "genderGenes", "msYgenes", "XiEgenes" ] }, { "page": "hkGenes", "title": "Housekeeping Genes from Eisenberg and Levanon (2003)", "topics": [ "hkGenes" ] }, { "page": "montgomery", "title": "RNA-seq count data from Montgomery et al. (2010)", "topics": [ "montgomery", "montgomery.eset" ] }, { "page": "pickrell", "title": "RNA-seq count data from Pickrell et al. (2010)", "topics": [ "pickrell", "pickrell.eset", "pickrell1", "pickrell1.eset", "pickrell1Norm", "pickrell1Norm.eset", "pickrellNorm", "pickrellNorm.eset" ] } ], "_rundeps": [ "Biobase", "BiocGenerics", "generics" ], "_vignettes": [ { "source": "tweeDEseqCountData.Rmd", "filename": "tweeDEseqCountData.html", "title": "references", "engine": "knitr::rmarkdown", "headings": [ "Overview", "sessionInfo()" ], "created": "2023-10-18 07:18:04", "modified": "2023-10-18 07:18:04", "commits": 1 } ], "_score": 3.954242509439325, "_indexed": true, "_nocasepkg": "tweedeseqcountdata", "_universes": [ "bioc", "isglobal-exposomehub", "isglobal-brge" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.51.0", "date": "2026-10-10T10:34:33.000Z", "distro": "resolute", "commit": "92081a4f2beaa5f9ce829eabf13cd8f7fd9ae3cc", "fileid": "https://r2.ropensci.org/3f173ae3bfb84763ed442feb0af1c64a683c5f5aef1f2f335892345ff3220ae3", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38044964510" }, { "r": "4.6.1", "os": "linux", "version": "1.51.0", "date": "2026-10-10T10:35:51.000Z", "distro": "resolute", "commit": "92081a4f2beaa5f9ce829eabf13cd8f7fd9ae3cc", "fileid": "https://r2.ropensci.org/ad1a2ebaeab0c82f31b27b754d4bc8c6fdf033e45b249080a7b7559749dcf6eb", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38044964510" } ] }