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Additionally it provides functions to\nanalyse and process the generated MS data and determine the\nbest conditions to maximise overall fragment coverage.", "License": "GPL (>= 3)", "URL": "https://codeberg.org/sgibb/topdownr/", "BugReports": "https://codeberg.org/sgibb/topdownr/issues/", "LazyData": "true", "VignetteBuilder": "knitr", "Roxygen": "list(markdown=TRUE)", "RoxygenNote": "7.3.3", "biocViews": "ImmunoOncology, Infrastructure, Proteomics,\nMassSpectrometry, Coverage", "Encoding": "UTF-8", "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libuv1-dev\nlibxml2-dev libnetcdf-dev libssl-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:46:43 UTC", "RemoteUrl": "https://github.com/bioc/topdownr", "RemoteRef": "HEAD", "RemoteSha": "b3262a2923148d7b3b64672fbfc23f3a8e3e953c", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-24 06:33:57 UTC", "User": "root" }, "Author": "Sebastian Gibb [aut, cre] (ORCID:\n),\nPavel Shliaha 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