{ "_id": "6a1af3d21d7bb097a09f8777", "Package": "topGO", "Type": "Package", "Title": "Enrichment Analysis for Gene Ontology", "Version": "2.65.0", "Date": "2025-06-23", "Authors@R": "c(\nperson(\ngiven = \"Adrian\", family = \"Alexa\", role = c(\"aut\"),\nemail = \"adrian.alexa@gmail.com\"\n),\nperson(\ngiven = \"Jörg\", family = \"Rahnenführer\", role = c(\"aut\")\n),\nperson(\ngiven = \"Federico\", family = \"Marini\", role = c(\"cre\"),\nemail = \"marinif@uni-mainz.de\", comment = c(ORCID = \"0000-0003-3252-7758\")\n)\n)", "Description": "topGO package provides tools for testing GO terms while\naccounting for the topology of the GO graph. Different test\nstatistics and different methods for eliminating local\nsimilarities and dependencies between GO terms can be\nimplemented and applied.", "License": "LGPL", "Encoding": "UTF-8", "Collate": "AllClasses.R topGOmethods.R topGOgraph.R topGOalgo.R\ntopGOfunctions.R topGOannotations.R topGOtests.R topGOviz.R\nzzz.R", "VignetteBuilder": "knitr", "URL": "https://github.com/federicomarini/topGO", "BugReports": "https://github.com/federicomarini/topGO/issues", "biocViews": "GeneExpression, Transcriptomics, GeneSetEnrichment, GO,\nAnnotation, Pathways, SystemsBiology, Microarray, Sequencing,\nVisualization, Software", "Config/pak/sysreqs": "libpng-dev libssl-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:32:13 UTC", "RemoteUrl": "https://github.com/bioc/topGO", "RemoteRef": "HEAD", "RemoteSha": "b30d41d2b8bd16cb7c711a188e4dfea80a203aa3", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 09:45:10 UTC", "User": "root" }, "Author": "Adrian Alexa [aut],\nJörg Rahnenführer [aut],\nFederico Marini [cre] (ORCID: )", "Maintainer": "Federico Marini ", "MD5sum": "90dfb3ba262416299e33016d03e5ce93", "_user": "bioc", "_type": "src", "_file": "topGO_2.65.0.tar.gz", "_fileid": "d2134c98d7c13f3ca182a167fcf3f638ebe6035625cbb42c4b9ce25ecac3b293", "_filesize": 2214963, "_sha256": "d2134c98d7c13f3ca182a167fcf3f638ebe6035625cbb42c4b9ce25ecac3b293", "_created": "2026-05-30T09:45:10.000Z", "_published": "2026-05-30T14:27:30.343Z", "_jobs": [ { "job": 78640532659, "time": 224, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7307462306" }, { "job": 78640532663, "time": 295, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7307468023" }, { "job": 78640532665, "time": 286, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7307467923" }, { "job": 78640532678, "time": 217, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", 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analysis with topGO", "author": "Adrian Alexa, Jörg Rahnenführer, Federico Marini", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Installation", "Quick start guide", "Data preparation", "Performing the enrichment tests", "Analysis of results", "The gene universe and the set of interesting genes", "The topGOdata object", "Custom annotations", "Predefined list of interesting genes", "Using the genes score", "Filtering and missing GO annotations", "Working with the topGOdata object", "Running the enrichment tests", "Defining and running the test", "The groupStats classes", "Performing the test", "The adjustment of $p$-values", "runTest: a high-level interface for testing", "Interpretation and visualization of results", "The topGOresult object", "Summarising the results", "Analysing individual GOs", "Visualising the GO structure", "Session Information", "References" ], "created": "2025-07-18 12:19:37", "modified": "2025-07-18 12:19:37", "commits": 1 } ], "_score": 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