{
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  "Package": "tigre",
  "Version": "1.67.0",
  "Date": "2021-08-04",
  "Title": "Transcription factor Inference through Gaussian process\nReconstruction of Expression",
  "Author": "Antti Honkela, Pei Gao, Jonatan Ropponen, Miika-Petteri\nMatikainen, Magnus Rattray, Neil D. Lawrence",
  "Maintainer": "Antti Honkela <antti.honkela@helsinki.fi>",
  "Description": "The tigre package implements our methodology of Gaussian\nprocess differential equation models for analysis of gene\nexpression time series from single input motif networks. The\npackage can be used for inferring unobserved transcription\nfactor (TF) protein concentrations from expression measurements\nof known target genes, or for ranking candidate targets of a\nTF.",
  "License": "AGPL-3",
  "URL": "https://github.com/ahonkela/tigre",
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  "biocViews": "Microarray, TimeCourse, GeneExpression, Transcription,\nGeneRegulation, NetworkInference, Bayesian",
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        "tigre"
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        "gammaPriorGradient",
        "gammaPriorLogProb",
        "gpdisimGradient",
        "gpdisimLogLikeGradients",
        "gpdisimLogLikelihood",
        "gpdisimObjective",
        "gpsimGradient",
        "gpsimLogLikeGradients",
        "gpsimLogLikelihood",
        "gpsimObjective",
        "invgammaPriorGradient",
        "invgammaPriorLogProb",
        "kernPriorGradient",
        "kernPriorLogProb",
        "modelGradient",
        "modelLogLikelihood",
        "modelObjective",
        "priorGradient",
        "priorLogProb"
      ]
    },
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      "topics": [
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      "page": "scoreList-class",
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        "params",
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        "scoreList",
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