{
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  "Package": "tRNA",
  "Title": "Analyzing tRNA sequences and structures",
  "Version": "1.31.0",
  "Date": "2025-07-28",
  "Authors@R": "person(\"Felix GM\", \n\"Ernst\",\nemail = \"felix.gm.ernst@outlook.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-5064-0928\"))",
  "Description": "The tRNA package allows tRNA sequences and structures to\nbe accessed and used for subsetting. In addition, it provides\nvisualization tools to compare feature parameters of multiple\ntRNA sets and correlate them to additional data. The tRNA\npackage uses GRanges objects as inputs requiring only few\nadditional column data sets.",
  "License": "GPL-3 + file LICENSE",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "biocViews": "Software, Visualization",
  "Collate": "'tRNA.R' 'AllGenerics.R' 'tRNA-checks.R' 'tRNA-dotbracket.R'\n'tRNA-features.R' 'tRNA-plot.R' 'tRNA-sequences.R'\n'tRNA-structures.R' 'tRNA-subset.R' 'tRNA-utils.R' 'utils.R'",
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  "BugReports": "https://github.com/FelixErnst/tRNA/issues",
  "Config/pak/sysreqs": "libicu-dev zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:48:58 UTC",
  "RemoteUrl": "https://github.com/bioc/tRNA",
  "RemoteRef": "HEAD",
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  "NeedsCompilation": "no",
  "Packaged": {
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    "User": "root"
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  "Author": "Felix GM Ernst [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-5064-0928>)",
  "Maintainer": "Felix GM Ernst <felix.gm.ernst@outlook.com>",
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  "_realowner": "bioc",
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    "gettRNAFeaturePlots",
    "gettRNALoopIDs",
    "gettRNAstructureGRanges",
    "gettRNAstructureSeqs",
    "gettRNASummary",
    "hasAcceptorStem",
    "hasAnticodonLoop",
    "hasAnticodonStem",
    "hasDloop",
    "hasDStem",
    "hasTloop",
    "hasTStem",
    "hasVariableLoop",
    "istRNAGRanges"
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      "title": "tRNA example data",
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      "class": [
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      "table": false,
      "tojson": false
    },
    {
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      "title": "tRNA example data",
      "object": "gr_eco",
      "class": [
        "GRanges"
      ],
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      "table": false,
      "tojson": false
    },
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      "name": "gr_human",
      "title": "tRNA example data",
      "object": "gr_human",
      "class": [
        "GRanges"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
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      "title": "tRNA example data",
      "object": "gr_human2",
      "class": [
        "GRanges"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
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    {
      "page": "gettRNABasePairing",
      "title": "Accessing Dot Bracket annotation of tRNAs",
      "topics": [
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        "gettRNABasePairing,GRanges-method",
        "gettRNALoopIDs",
        "gettRNALoopIDs,GRanges-method"
      ]
    },
    {
      "page": "gettRNAFeaturePlots",
      "title": "Graphical summary of tRNA features",
      "topics": [
        "gettRNAFeaturePlots",
        "gettRNAFeaturePlots,GRangesList-method"
      ]
    },
    {
      "page": "gettRNAstructureSeqs",
      "title": "tRNA structures and sequences",
      "topics": [
        "gettRNAstructureGRanges",
        "gettRNAstructureGRanges,GRanges-method",
        "gettRNAstructureSeqs",
        "gettRNAstructureSeqs,GRanges-method"
      ]
    },
    {
      "page": "gettRNASummary",
      "title": "Summary of tRNA features",
      "topics": [
        "gettRNASummary",
        "gettRNASummary,GRanges-method",
        "gettRNASummary,GRangesList-method"
      ]
    },
    {
      "page": "tRNA-subset",
      "title": "Subsetting tRNAs",
      "topics": [
        "hasAcceptorStem",
        "hasAcceptorStem,GRanges-method",
        "hasAnticodonLoop",
        "hasAnticodonLoop,GRanges-method",
        "hasAnticodonStem",
        "hasAnticodonStem,GRanges-method",
        "hasDloop",
        "hasDloop,GRanges-method",
        "hasDStem",
        "hasDStem,GRanges-method",
        "hasTloop",
        "hasTloop,GRanges-method",
        "hasTStem",
        "hasTStem,GRanges-method",
        "hasVariableLoop",
        "hasVariableLoop,GRanges-method",
        "tRNA-subset"
      ]
    },
    {
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      "title": "tRNA compatibility check",
      "topics": [
        "istRNAGRanges",
        "istRNAGRanges,GRanges-method"
      ]
    },
    {
      "page": "tRNA",
      "title": "tRNA: analyzing tRNA sequences and structures",
      "topics": [
        "tRNA-package",
        "tRNA"
      ]
    },
    {
      "page": "tRNA-data",
      "title": "tRNA example data",
      "topics": [
        "gr",
        "gr_eco",
        "gr_human",
        "gr_human2",
        "tRNA-data"
      ]
    }
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