{ "_id": "6a30f98e3efcd9bda434d988", "Package": "staRgate", "Title": "Automated gating pipeline for flow cytometry analysis to\ncharacterize the lineage, differentiation, and functional\nstates of T-cells", "Version": "1.1.0", "Authors@R": "c(\nperson(\"Jasme\", \"Lee\", email = \"leej22@mskcc.org\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0009-0006-4492-4872\")),\nperson(\"Matthew\", \"Adamow\", role = c(\"aut\")),\nperson(\"Colleen\", \"Maher\", role = c(\"aut\")),\nperson(\"Xiyu\", \"Peng\", role = c(\"aut\")),\nperson(\"Phillip\", \"Wong\", role = c(\"aut\")),\nperson(\"Fiona\", \"Ehrich\", role = c(\"aut\")),\nperson(\"Michael\", \"Postow\", middle = \"A\", role = c(\"aut\")),\nperson(\"Margaret\", \"Callahan\", middle = \"K\", role = c(\"aut\")),\nperson(\"Ronglai\", \"Shen\", role = c(\"aut\")),\nperson(\"Katherine\", \"Panageas\", middle = \"S\", role = c(\"aut\")),\nperson(\"V foundation\", role = \"fnd\"),\nperson(\"MSK-MIND\", role = \"fnd\"),\nperson(\"NIH R01CA276286\", role = \"fnd\"),\nperson(\"NIH P30CA008748\", role = \"fnd\")\n)", "Description": "An R-based automated gating pipeline for flow cytometry\ndata designed to mimic the manual gating strategy of defining\nflow biomarker positive populations relative to a unimodal\nbackground population to include cells with varying intensities\nof marker expression. The pipeline’s main feature is a flexible\ndensity-based gating strategy capable of capturing varying\nscenarios based on marker expression patterns to analyze a\n29-marker flow panel that characterizes T-cell lineage,\ndifferentiation, and functional states.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "biocViews": "FlowCytometry, Preprocessing, ImmunoOncology", "VignetteBuilder": "knitr", "BugReports": "https://github.com/leejasme/staRgate/issues", "URL": "https://bioconductor.org/packages/staRgate,\nhttps://leejasme.github.io/staRgate", "Config/testthat/edition": "3", "Config/pak/sysreqs": "libicu-dev libxml2-dev libssl-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 13:06:11 UTC", "RemoteUrl": "https://github.com/bioc/staRgate", "RemoteRef": "HEAD", "RemoteSha": "64cb14695c16827a15d097c41d2dc26a5748626a", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-16 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