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  "Title": "Upstream pre-processing for Sequencing-Based Spatial\nTranscriptomics",
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  "Authors@R": "c(person(\"Yang\", \"Xu\", role=c(\"aut\", \"cre\"), email=\"xu.ya@wehi.edu.au\", comment=c(ORCID=\"0009-0008-3274-6516\")), \nperson(\"Callum\", \"Sargeant\", role=c(\"aut\"), email=\"sargeant.ca@wehi.edu.au\"),\nperson(\"Shian\", \"Su\", role=c(\"aut\"), email=\"su.s@wehi.edu.au\"),\nperson(\"Luyi\", \"Tian\", role=c(\"aut\"), email=\"tian.l@wehi.edu.au\"),\nperson(\"Yunshun\", \"Chen\", role=c(\"ctb\"), email=\"yuchen@wehi.edu.au\"),\nperson(\"Matthew\", \"Ritchie\", role=c(\"ctb\", \"fnd\"), email=\"mritchie@wehi.edu.au\"))",
  "biocViews": "ImmunoOncology, Software, Sequencing, RNASeq,\nGeneExpression, SingleCell, Visualization, SequenceMatching,\nPreprocessing, QualityControl, GenomeAnnotation, DataImport,\nSpatial, Transcriptomics, Clustering",
  "Description": "This package serves as an upstream pipeline for\npre-processing sequencing-based spatial transcriptomics data.\nFunctions includes FASTQ trimming, BAM file reformatting, index\nbuilding, spatial barcode detection, demultiplexing, gene count\nmatrix generation with UMI deduplication, QC, and revelant\nvisualization. Config is an essential input for most of the\nfunctions which aims to improve reproducibility.",
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  "URL": "https://github.com/mritchielab/stPipe",
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  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 13:05:24 UTC",
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  "_created": "2026-10-26T13:53:18.000Z",
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