{ "_id": "6a4999224ae8ee07ee132931", "Package": "specL", "Type": "Package", "Title": "specL - Prepare Peptide Spectrum Matches for Use in Targeted\nProteomics", "Version": "1.47.0", "Authors@R": "c(person(\"Christian\", \"Panse\", \nemail = \"cp@fgcz.ethz.ch\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-1975-3064\")),\nperson(\"Jonas\", \"Grossmann\",\nemail = \"jg@fgcz.ethz.ch\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-6899-9020\")),\nperson(\"Christian\", \"Trachsel\",\nrole = \"aut\"),\nperson(\"Witold E.\", \"Wolski\",\nemail = \"wew@fgcz.ethz.ch\",\nrole = \"ctb\"))", "Description": "provides a functions for generating spectra libraries that\ncan be used for MRM SRM MS workflows in proteomics. The package\nprovides a BiblioSpec reader, a function which can add the\nprotein information using a FASTA formatted amino acid file,\nand an export method for using the created library in the\nSpectronaut software. The package is developed, tested and used\nat the Functional Genomics Center Zurich .", "License": "GPL-3", "URL": "http://bioconductor.org/packages/specL/", "Collate": "read.bibliospec.R genSwathIonLib.R annotate.protein_id.R\nAllGenerics.R specL.R specLSet.R cdsw.R zzz.R", "biocViews": "MassSpectrometry, Proteomics", "LazyData": "true", "BugReports": "https://github.com/fgcz/specL/issues", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:40:12 UTC", "RemoteUrl": "https://github.com/bioc/specL", "RemoteRef": "HEAD", "RemoteSha": "e53853a540e31221948de74931980c6139d5fa7b", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-21 09:17:13 UTC", "User": "root" }, "Author": "Christian Panse [aut, cre] (ORCID:\n),\nJonas Grossmann [aut] (ORCID: ),\nChristian Trachsel [aut],\nWitold E. 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