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  "Title": "spatialHeatmap: Visualizing Spatial Assays in Anatomical Images\nand Large-Scale Data Extensions",
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  "Date": "2026-05-12",
  "Authors@R": "c(\nperson(given=\"Jianhai\", family=\"Zhang\", role=c(\"aut\", \"trl\", \"cre\"), email=\"jzhan067@ucr.edu\", comment=\"\"),\nperson(given=\"Le\", family=\"Zhang\", role=\"aut\", email=\"lzhan140@ucr.edu\", comment=\"\"),\nperson(given=\"Jordan\", family=\"Hayes\", role=\"aut\", email=\"jhayes@ucr.edu\", comment=\"\"),\nperson(given=\"Brendan\", family=\"Gongol\", role=\"aut\", email=\"brendan.gongol@ucr.edu\", comment=\"\"),\nperson(given=\"Alexander\", family=\"Borowsky\", role=\"aut\", email=\"aboro002@ucr.edu\", comment=\"\"),\nperson(given=\"Julia\", family=\"Bailey-Serres\", role=\"aut\", email=\"julia.bailey@ucr.edu\", comment=\"\"),\nperson(given=\"Thomas\", family=\"Girke\", role=\"aut\", email=\"thomas.girke@ucr.edu\", comment=\"\")\n)",
  "Description": "The spatialHeatmap package offers the primary\nfunctionality for visualizing cell-, tissue- and organ-specific\nassay data in spatial anatomical images. Additionally, it\nprovides extended functionalities for large-scale data mining\nroutines and co-visualizing bulk and single-cell data. A\ndescription of the project is available here:\nhttps://spatialheatmap.org.",
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    },
    {
      "page": "plot_meta",
      "title": "Meta function for plotting spatial heatmaps or co-visualizing bulk and single cell data",
      "topics": [
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      ]
    },
    {
      "page": "process_cell_meta",
      "title": "Processing single cell RNA-seq count data",
      "topics": [
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    },
    {
      "page": "qc_cell",
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      "topics": [
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    },
    {
      "page": "read_cache",
      "title": "Read R Objects from Cache",
      "topics": [
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    },
    {
      "page": "read_fr",
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      "topics": [
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    },
    {
      "page": "read_svg",
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    },
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      "page": "reduce_dim",
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      "topics": [
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    {
      "page": "reduce_rep",
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      "topics": [
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    },
    {
      "page": "return_feature",
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    },
    {
      "page": "save_cache",
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    },
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      "page": "shiny_shm",
      "title": "Integrated Shiny App",
      "topics": [
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    },
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      "page": "shm",
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      "page": "spatial_hm",
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    {
      "page": "SpatialEnrichment",
      "title": "Identifying spatially enriched or depleted biomolecules",
      "topics": [
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      "page": "SPHM",
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      "page": "SPHMMethods",
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    {
      "page": "SVG",
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      "topics": [
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    {
      "page": "SVGMethods",
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