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  "Package": "sitadela",
  "Type": "Package",
  "Title": "An R package for the easy provision of simple but complete\ntab-delimited genomic annotation from a variety of sources and\norganisms",
  "Authors@R": "c(person(given=\"Panagiotis\", family=\"Moulos\",\nemail=\"moulos@fleming.gr\", role=c(\"aut\", \"cre\")))",
  "Description": "Provides an interface to build a unified database of\ngenomic annotations and their coordinates (gene, transcript and\nexon levels). It is aimed to be used when simple tab-delimited\nannotations (or simple GRanges objects) are required instead of\nthe more complex annotation Bioconductor packages. Also useful\nwhen combinatorial annotation elements are reuired, such as\nRefSeq coordinates with Ensembl biotypes. Finally, it can\ndownload, construct and handle annotations with versioned genes\nand transcripts (where available, e.g. RefSeq and latest\nEnsembl). This is particularly useful in precision medicine\napplications where the latter must be reported.",
  "License": "Artistic-2.0",
  "Encoding": "UTF-8",
  "URL": "https://github.com/pmoulos/sitadela",
  "biocViews": "Software, WorkflowStep, RNASeq, Transcription, Sequencing,\nTranscriptomics, BiomedicalInformatics, FunctionalGenomics,\nSystemsBiology, AlternativeSplicing, DataImport, ChIPSeq",
  "VignetteBuilder": "knitr",
  "BugReports": "https://github.com/pmoulos/sitadela/issues",
  "Version": "1.21.0",
  "Date": "2026-03-26",
  "Collate": "'argcheck.R' 'fromtxdb.R' 'query-ensembl.R' 'query-ncbi.R'\n'query-refseq.R' 'query-ucsc.R' 'query-utils.R' 'reduceops.R'\n'sitadela.R' 'testfuns.R' 'zzz.R'",
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  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:55:16 UTC",
  "RemoteUrl": "https://github.com/bioc/sitadela",
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    "User": "root"
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  "Author": "Panagiotis Moulos [aut, cre]",
  "Maintainer": "Panagiotis Moulos <moulos@fleming.gr>",
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    "addCustomAnnotation",
    "getAnnotation",
    "getDbPath",
    "getInstalledAnnotations",
    "getSeqInfo",
    "getUserAnnotations",
    "importCustomAnnotation",
    "loadAnnotation",
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      "page": "addAnnotation",
      "title": "Build a local genomic regions annotation database",
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      ]
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      "title": "Import custom annotation to existing or new sitadela annotation database from GTF file",
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      ]
    },
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      "title": "Annotation downloader",
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      ]
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      "title": "List installed sitadela annotations",
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      ]
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      ]
    },
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