{
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  "Title": "Collection and implementation of public transcriptional cancer\nsignatures",
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  "Authors@R": "c(person(\"Stefania\", \"Pirrotta\", role = c(\"cre\", \"aut\"),\nemail = \"stefania.pirrotta@phd.unipd.it\",\ncomment = c(ORCID = \"0009-0004-0030-217X\")),\nperson(\"Enrica\", \"Calura\", role = \"aut\",\nemail = \"enrica.calura@unipd.it\",\ncomment = c(ORCID = \"0000-0001-8463-2432\")))",
  "Description": "signifinder is an R package for computing and exploring a\ncompendium of tumor signatures. It allows to compute a variety\nof signatures coming from public literature, based on gene\nexpression values, and return single-sample (-cell/-spot)\nscores. Currently, signifinder collects more than 70 distinct\nsignatures, relating to multiple tumors and multiple cancer\nprocesses.",
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  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:59:17 UTC",
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  "Author": "Stefania Pirrotta [cre, aut] (ORCID:\n<https://orcid.org/0009-0004-0030-217X>),\nEnrica Calura [aut] (ORCID: <https://orcid.org/0000-0001-8463-2432>)",
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      "title": "Adenosine Signaling Signature",
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      "page": "autophagySign",
      "title": "Autophagy Signature",
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    },
    {
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      "title": "CD39+ CD8+ T cells Signature",
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      "title": "Chemokine Signature",
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    {
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    {
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      "title": "ConsensusOV Signature",
      "topics": [
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      "topics": [
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    {
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      "page": "interferonSign",
      "title": "Interferon Signature",
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      "page": "IPRESSign",
      "title": "IPRES Signature",
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      "page": "LRRC15CAFSign",
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    {
      "page": "matrisomeSign",
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    {
      "page": "metalSign",
      "title": "Metal Response Signature",
      "topics": [
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    {
      "page": "MITFlowPTENnegSign",
      "title": "MITFlow/PTENneg Signature",
      "topics": [
        "MITFlowPTENnegSign"
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    {
      "page": "mitoticIndexSign",
      "title": "Mitotic Index",
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        "mitoticIndexSign"
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    {
      "page": "MPSSign",
      "title": "Melanocytic Plasticity Signature",
      "topics": [
        "MPSSign"
      ]
    },
    {
      "page": "multipleSign",
      "title": "Multiple Signatures Computation",
      "topics": [
        "multipleSign"
      ]
    },
    {
      "page": "oneSignPlot",
      "title": "Scatterplot for a single signature",
      "topics": [
        "oneSignPlot"
      ]
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    {
      "page": "ovse",
      "title": "Example expression data.",
      "topics": [
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      ]
    },
    {
      "page": "oxphosSign",
      "title": "Oxidative Phosphorylation Signature",
      "topics": [
        "oxphosSign"
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    },
    {
      "page": "PassONSign",
      "title": "passON Signature",
      "topics": [
        "PassONSign"
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    },
    {
      "page": "pyroptosisSign",
      "title": "Pyroptosis Signature",
      "topics": [
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      "page": "ridgelineSignPlot",
      "title": "Ridgeline Plot",
      "topics": [
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    {
      "page": "SCSubtypeSign",
      "title": "Breast Cancer Subtypes Signature",
      "topics": [
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    },
    {
      "page": "stateSign",
      "title": "Cellular States Signature",
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      "title": "CD49fHi Basal Stem Cell Signature",
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    },
    {
      "page": "stressSign",
      "title": "Stress Response Signature",
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      "page": "survivalSignPlot",
      "title": "Survival Plot",
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    {
      "page": "TGFBSign",
      "title": "Pan-Fibroblast TGFB Response Signature",
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      "page": "TinflamSign",
      "title": "TinflamSign Signature",
      "topics": [
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    },
    {
      "page": "TLSSign",
      "title": "Tertiary Lymphoid Structures (TLS) Signature",
      "topics": [
        "TLSSign"
      ]
    },
    {
      "page": "VEGFSign",
      "title": "VEGF Signature",
      "topics": [
        "VEGFSign"
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    }
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