{ "_id": "6a493fb4a19c9318096e81eb", "Package": "seq2pathway", "Type": "Package", "Title": "a novel tool for functional gene-set (or termed as pathway)\nanalysis of next-generation sequencing data", "Version": "1.45.0", "Date": "2021-11-21", "Author": "Xinan Yang ; Bin Wang ", "Maintainer": "Arjun Kinstlick ", "biocViews": "Software", "Description": "Seq2pathway is a novel tool for functional gene-set (or\ntermed as pathway) analysis of next-generation sequencing data,\nconsisting of \"seq2gene\" and \"gene2path\" components. The\nseq2gene links sequence-level measurements of genomic regions\n(including SNPs or point mutation coordinates) to gene-level\nscores, and the gene2pathway summarizes gene scores to\npathway-scores for each sample. The seq2gene has the\nfeasibility to assign both coding and non-exon regions to a\nbroader range of neighboring genes than only the nearest one,\nthus facilitating the study of functional non-coding regions.\nThe gene2pathway takes into account the quantity of\nsignificance for gene members within a pathway compared those\noutside a pathway. The output of seq2pathway is a general\nstructure of quantitative pathway-level scores, thus allowing\none to functional interpret such datasets as RNA-seq, ChIP-seq,\nGWAS, and derived from other next generational sequencing\nexperiments.", "License": "GPL-2", "Config/pak/sysreqs": "cmake make libicu-dev libpng-dev libuv1-dev\nlibxml2-dev libssl-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:40:28 UTC", "RemoteUrl": "https://github.com/bioc/seq2pathway", "RemoteRef": "HEAD", "RemoteSha": "ff835e8a3c4bc21fe50dd9dccd0c7a73f35eac35", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-04 05:25:43 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "seq2pathway_1.45.0.tar.gz", "_fileid": "https://r2.ropensci.org/24d4054bbd98a637f52b3c1f8d960a9f0fc8c0225846efb6cf3b2dee55289b72", "_filesize": 1617948, "_sha256": "24d4054bbd98a637f52b3c1f8d960a9f0fc8c0225846efb6cf3b2dee55289b72", "_expires": "2026-10-12T17:15:30.000Z", 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