{
  "_id": "6a49768d6d67900babdf592c",
  "Package": "scran",
  "Version": "1.41.1",
  "Date": "2026-05-20",
  "Title": "Methods for Single-Cell RNA-Seq Data Analysis",
  "Description": "Implements miscellaneous functions for interpretation of\nsingle-cell RNA-seq data. Methods are provided for assignment\nof cell cycle phase, detection of highly variable and\nsignificantly correlated genes, identification of marker genes,\nand other common tasks in routine single-cell analysis\nworkflows.",
  "Authors@R": "c(person(\"Aaron\", \"Lun\", role = c(\"aut\", \"cre\"), email = \"infinite.monkeys.with.keyboards@gmail.com\"),\nperson(\"Karsten\", \"Bach\", role = \"aut\"),\nperson(\"Jong Kyoung\", \"Kim\", role = \"ctb\"),\nperson(\"Antonio\", \"Scialdone\", role=\"ctb\"))",
  "biocViews": "ImmunoOncology, Normalization, Sequencing, RNASeq, Software,\nGeneExpression, Transcriptomics, SingleCell, Clustering",
  "License": "GPL-3",
  "NeedsCompilation": "yes",
  "VignetteBuilder": "knitr",
  "SystemRequirements": "C++11",
  "URL": "https://github.com/MarioniLab/scran/",
  "BugReports": "https://github.com/MarioniLab/scran/issues",
  "Config/roxygen2/version": "8.0.0",
  "Encoding": "UTF-8",
  "Config/pak/sysreqs": "libglpk-dev libxml2-dev zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-05-20 05:35:05 UTC",
  "RemoteUrl": "https://github.com/bioc/scran",
  "RemoteRef": "HEAD",
  "RemoteSha": "569d2f89d928451efa912f52f213af2f47c3a695",
  "Packaged": {
    "Date": "2026-06-23 15:30:15 UTC",
    "User": "root"
  },
  "Author": "Aaron Lun [aut, cre],\nKarsten Bach [aut],\nJong Kyoung Kim [ctb],\nAntonio Scialdone [ctb]",
  "Maintainer": "Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>",
  "_user": "bioc",
  "_type": "src",
  "_file": "scran_1.41.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/e88a80224143fe456e1cc497d68b17f878c94d3fb54d762a06b0d74135a4aa28",
  "_filesize": 1047445,
  "_sha256": "e88a80224143fe456e1cc497d68b17f878c94d3fb54d762a06b0d74135a4aa28",
  "_expires": "2026-10-12T21:09:31.000Z",
  "_created": "2026-06-23T15:30:15.000Z",
  "_published": "2026-07-04T21:09:33.070Z",
  "_bioccheck": {
    "error": 0,
    "warning": 2,
    "note": 11
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28035937292",
  "_status": "success",
  "_upstream": "https://github.com/bioc/scran",
  "_commit": {
    "id": "569d2f89d928451efa912f52f213af2f47c3a695",
    "author": "LTLA <infinite.monkeys.with.keyboards@gmail.com>",
    "committer": "LTLA <infinite.monkeys.with.keyboards@gmail.com>",
    "message": "Removed the deprecated convertTo function and its dependencies.\n",
    "time": 1779255305
  },
  "_maintainer": {
    "name": "Aaron Lun",
    "email": "infinite.monkeys.with.keyboards@gmail.com",
    "login": "ltla",
    "twitter": "@realAaronLun",
    "description": "(ノಠ益ಠ)ノ彡┻━┻\n",
    "uuid": 8166669
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 85167199168,
      "time": 756,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7825845047"
    },
    {
      "job": 85167199228,
      "time": 1057,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "7825976464"
    },
    {
      "job": 85167199198,
      "time": 1187,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "7826031192"
    },
    {
      "job": 85167199306,
      "time": 1069,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7825981295"
    },
    {
      "job": 85167199177,
      "time": 1248,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7826057643"
    },
    {
      "job": 85167199296,
      "time": 771,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7825857263"
    },
    {
      "job": 85167199233,
      "time": 1579,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7826202688"
    },
    {
      "job": 85167199195,
      "time": 453,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7825714551"
    },
    {
      "job": 85167199185,
      "time": 823,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7825874338"
    },
    {
      "job": 85167198858,
      "time": 1259,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7825505820"
    },
    {
      "job": 85167199117,
      "time": 932,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7825920837"
    },
    {
      "job": 85167199178,
      "time": 1125,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "7826003934"
    },
    {
      "job": 85167199140,
      "time": 1207,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7826039499"
    },
    {
      "job": 85167199191,
      "time": 1286,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7826074814"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "SingleCellExperiment",
      "role": "Depends"
    },
    {
      "package": "scuttle",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "beachmat",
      "role": "LinkingTo"
    },
    {
      "package": "BH",
      "role": "LinkingTo"
    },
    {
      "package": "dqrng",
      "role": "LinkingTo"
    },
    {
      "package": "scuttle",
      "role": "LinkingTo"
    },
    {
      "package": "SummarizedExperiment",
      "role": "Imports"
    },
    {
      "package": "S4Vectors",
      "role": "Imports"
    },
    {
      "package": "BiocGenerics",
      "role": "Imports"
    },
    {
      "package": "BiocParallel",
      "role": "Imports"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "Matrix",
      "role": "Imports"
    },
    {
      "package": "edgeR",
      "role": "Imports"
    },
    {
      "package": "limma",
      "role": "Imports"
    },
    {
      "package": "igraph",
      "role": "Imports"
    },
    {
      "package": "statmod",
      "role": "Imports"
    },
    {
      "package": "MatrixGenerics",
      "role": "Imports"
    },
    {
      "package": "S4Arrays",
      "role": "Imports"
    },
    {
      "package": "DelayedArray",
      "role": "Imports"
    },
    {
      "package": "BiocSingular",
      "role": "Imports"
    },
    {
      "package": "bluster",
      "role": "Imports"
    },
    {
      "package": "metapod",
      "role": "Imports"
    },
    {
      "package": "dqrng",
      "role": "Imports"
    },
    {
      "package": "beachmat",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "DelayedMatrixStats",
      "role": "Suggests"
    },
    {
      "package": "HDF5Array",
      "role": "Suggests"
    },
    {
      "package": "scRNAseq",
      "role": "Suggests"
    },
    {
      "package": "dynamicTreeCut",
      "role": "Suggests"
    },
    {
      "package": "ResidualMatrix",
      "role": "Suggests"
    },
    {
      "package": "ScaledMatrix",
      "role": "Suggests"
    },
    {
      "package": "pheatmap",
      "role": "Suggests"
    },
    {
      "package": "scater",
      "role": "Suggests"
    },
    {
      "package": "scrapper",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 38,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-09",
      "n": 1
    },
    {
      "week": "2026-15",
      "n": 4
    },
    {
      "week": "2026-18",
      "n": 2
    },
    {
      "week": "2026-21",
      "n": 3
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.41.1",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.40.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "immunooncology",
    "normalization",
    "sequencing",
    "rnaseq",
    "software",
    "geneexpression",
    "transcriptomics",
    "singlecell",
    "clustering",
    "bioconductor-package",
    "human-cell-atlas",
    "single-cell-rna-seq",
    "openblas",
    "cpp"
  ],
  "_stars": 48,
  "_contributors": [
    {
      "user": "ltla",
      "count": 679,
      "uuid": 8166669
    },
    {
      "user": "jwokaty",
      "count": 16,
      "uuid": 1744257
    },
    {
      "user": "nturaga",
      "count": 14,
      "uuid": 2746443
    },
    {
      "user": "dtenenba",
      "count": 4,
      "uuid": 2286826
    },
    {
      "user": "hpages",
      "count": 3,
      "uuid": 8810451
    },
    {
      "user": "petehaitch",
      "count": 2,
      "uuid": 1049741
    },
    {
      "user": "vobencha",
      "count": 2,
      "uuid": 2466173
    },
    {
      "user": "kayla-morrell",
      "count": 1,
      "uuid": 32339524
    },
    {
      "user": "mr-c",
      "count": 1,
      "uuid": 1330696
    },
    {
      "user": "mrrobinhq",
      "count": 1,
      "uuid": 59745543
    },
    {
      "user": "bug1303",
      "count": 1,
      "uuid": 15782236
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 441,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_mentions": 113,
  "_devurl": "https://github.com/marionilab/scran",
  "_searchresults": 8672,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/scran.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/marionilab/scran",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    ".logBH",
    "bootstrapCluster",
    "buildKNNGraph",
    "buildSNNGraph",
    "calculateSumFactors",
    "clusterCells",
    "clusterKNNGraph",
    "clusterModularity",
    "clusterPurity",
    "clusterSNNGraph",
    "coassignProb",
    "combineBlocks",
    "combineCV2",
    "combineMarkers",
    "combinePValues",
    "combineVar",
    "computeMinRank",
    "computeSumFactors",
    "connectClusterMST",
    "convertTo",
    "correlateGenes",
    "correlateNull",
    "correlatePairs",
    "createClusterMST",
    "cyclone",
    "decideTestsPerLabel",
    "decomposeVar",
    "denoisePCA",
    "denoisePCANumber",
    "DM",
    "doubletCells",
    "doubletCluster",
    "doubletRecovery",
    "findMarkers",
    "fitTrendCV2",
    "fitTrendPoisson",
    "fitTrendVar",
    "fixedPCA",
    "getClusteredPCs",
    "getDenoisedPCs",
    "getMarkerEffects",
    "getTopHVGs",
    "getTopMarkers",
    "improvedCV2",
    "makeTechTrend",
    "modelGeneCV2",
    "modelGeneCV2WithSpikes",
    "modelGeneVar",
    "modelGeneVarByPoisson",
    "modelGeneVarWithSpikes",
    "multiBlockNorm",
    "multiBlockVar",
    "multiMarkerStats",
    "orderClusterMST",
    "overlapExprs",
    "pairwiseBinom",
    "pairwiseTTests",
    "pairwiseWilcox",
    "parallelPCA",
    "pseudoBulkDGE",
    "pseudoBulkSpecific",
    "quickCluster",
    "quickPseudotime",
    "quickSubCluster",
    "rhoToPValue",
    "sandbag",
    "scaledColRanks",
    "scoreMarkers",
    "summarizeTestsPerLabel",
    "summaryMarkerStats",
    "technicalCV2",
    "testLinearModel",
    "testPseudotime",
    "testVar",
    "trendVar"
  ],
  "_help": [
    {
      "page": "logBH",
      "title": "BH correction on log-p-values",
      "topics": [
        ".logBH"
      ]
    },
    {
      "page": "buildSNNGraph",
      "title": "Build a nearest-neighbor graph",
      "topics": [
        "buildKNNGraph",
        "buildKNNGraph,ANY-method",
        "buildKNNGraph,SingleCellExperiment-method",
        "buildSNNGraph",
        "buildSNNGraph,ANY-method",
        "buildSNNGraph,SingleCellExperiment-method",
        "buildSNNGraph,SummarizedExperiment-method"
      ]
    },
    {
      "page": "clusterCells",
      "title": "Cluster cells in a SingleCellExperiment",
      "topics": [
        "clusterCells"
      ]
    },
    {
      "page": "combineBlocks",
      "title": "Combine blockwise statistics",
      "topics": [
        "combineBlocks"
      ]
    },
    {
      "page": "combineMarkers",
      "title": "Combine pairwise DE results into a marker list",
      "topics": [
        "combineMarkers"
      ]
    },
    {
      "page": "combineVar",
      "title": "Combine variance decompositions",
      "topics": [
        "combineCV2",
        "combineVar"
      ]
    },
    {
      "page": "computeMinRank",
      "title": "Compute the minimum rank",
      "topics": [
        "computeMinRank"
      ]
    },
    {
      "page": "computeSumFactors",
      "title": "Normalization by deconvolution",
      "topics": [
        "calculateSumFactors",
        "computeSumFactors"
      ]
    },
    {
      "page": "correlateGenes",
      "title": "Per-gene correlation statistics",
      "topics": [
        "correlateGenes"
      ]
    },
    {
      "page": "correlateNull",
      "title": "Build null correlations",
      "topics": [
        "correlateNull"
      ]
    },
    {
      "page": "correlatePairs",
      "title": "Test for significant correlations",
      "topics": [
        "correlatePairs",
        "correlatePairs,ANY-method",
        "correlatePairs,SummarizedExperiment-method"
      ]
    },
    {
      "page": "cyclone",
      "title": "Cell cycle phase classification",
      "topics": [
        "cyclone",
        "cyclone,ANY-method",
        "cyclone,SummarizedExperiment-method"
      ]
    },
    {
      "page": "decideTestsPerLabel",
      "title": "Decide tests for each label",
      "topics": [
        "decideTestsPerLabel",
        "summarizeTestsPerLabel"
      ]
    },
    {
      "page": "defunct",
      "title": "Defunct functions",
      "topics": [
        "bootstrapCluster",
        "clusterKNNGraph",
        "clusterModularity",
        "clusterPurity",
        "clusterSNNGraph",
        "coassignProb",
        "combinePValues",
        "connectClusterMST",
        "convertTo",
        "createClusterMST",
        "decomposeVar",
        "defunct",
        "doubletCells",
        "doubletCluster",
        "doubletRecovery",
        "improvedCV2",
        "makeTechTrend",
        "multiBlockNorm",
        "multiBlockVar",
        "orderClusterMST",
        "overlapExprs",
        "parallelPCA",
        "quickPseudotime",
        "technicalCV2",
        "testPseudotime",
        "testVar",
        "trendVar"
      ]
    },
    {
      "page": "denoisePCA",
      "title": "Denoise expression with PCA",
      "topics": [
        "denoisePCA",
        "denoisePCANumber",
        "getDenoisedPCs",
        "getDenoisedPCs,ANY-method",
        "getDenoisedPCs,SummarizedExperiment-method"
      ]
    },
    {
      "page": "DM",
      "title": "Compute the distance-to-median statistic",
      "topics": [
        "DM"
      ]
    },
    {
      "page": "findMarkers",
      "title": "Find marker genes",
      "topics": [
        "findMarkers",
        "findMarkers,ANY-method",
        "findMarkers,SingleCellExperiment-method",
        "findMarkers,SummarizedExperiment-method"
      ]
    },
    {
      "page": "fitTrendCV2",
      "title": "Fit a trend to the CV2",
      "topics": [
        "fitTrendCV2"
      ]
    },
    {
      "page": "fitTrendPoisson",
      "title": "Generate a trend for Poisson noise",
      "topics": [
        "fitTrendPoisson"
      ]
    },
    {
      "page": "fitTrendVar",
      "title": "Fit a trend to the variances of log-counts",
      "topics": [
        "fitTrendVar"
      ]
    },
    {
      "page": "fixedPCA",
      "title": "PCA with a fixed number of components",
      "topics": [
        "fixedPCA"
      ]
    },
    {
      "page": "gene_selection",
      "title": "Gene selection",
      "topics": [
        "scran-gene-selection"
      ]
    },
    {
      "page": "getClusteredPCs",
      "title": "Use clusters to choose the number of PCs",
      "topics": [
        "getClusteredPCs"
      ]
    },
    {
      "page": "getMarkerEffects",
      "title": "Get marker effect sizes",
      "topics": [
        "getMarkerEffects"
      ]
    },
    {
      "page": "getTopHVGs",
      "title": "Identify HVGs",
      "topics": [
        "getTopHVGs"
      ]
    },
    {
      "page": "getTopMarkers",
      "title": "Get top markers",
      "topics": [
        "getTopMarkers"
      ]
    },
    {
      "page": "modelGeneCV2",
      "title": "Model the per-gene CV2",
      "topics": [
        "modelGeneCV2",
        "modelGeneCV2,ANY-method",
        "modelGeneCV2,SingleCellExperiment-method",
        "modelGeneCV2,SummarizedExperiment-method"
      ]
    },
    {
      "page": "modelGeneCV2WithSpikes",
      "title": "Model the per-gene CV2 with spike-ins",
      "topics": [
        "modelGeneCV2WithSpikes",
        "modelGeneCV2WithSpikes,ANY-method",
        "modelGeneCV2WithSpikes,SingleCellExperiment-method",
        "modelGeneCV2WithSpikes,SummarizedExperiment-method"
      ]
    },
    {
      "page": "modelGeneVar",
      "title": "Model the per-gene variance",
      "topics": [
        "modelGeneVar",
        "modelGeneVar,ANY-method",
        "modelGeneVar,SingleCellExperiment-method",
        "modelGeneVar,SummarizedExperiment-method"
      ]
    },
    {
      "page": "modelGeneVarByPoisson",
      "title": "Model the per-gene variance with Poisson noise",
      "topics": [
        "modelGeneVarByPoisson",
        "modelGeneVarByPoisson,ANY-method",
        "modelGeneVarByPoisson,SingleCellExperiment-method",
        "modelGeneVarByPoisson,SummarizedExperiment-method"
      ]
    },
    {
      "page": "modelGeneVarWithSpikes",
      "title": "Model the per-gene variance with spike-ins",
      "topics": [
        "modelGeneVarWithSpikes",
        "modelGeneVarWithSpikes,ANY-method",
        "modelGeneVarWithSpikes,SingleCellExperiment-method",
        "modelGeneVarWithSpikes,SummarizedExperiment-method"
      ]
    },
    {
      "page": "multiMarkerStats",
      "title": "Combine multiple sets of marker statistics",
      "topics": [
        "multiMarkerStats"
      ]
    },
    {
      "page": "pairwiseBinom",
      "title": "Perform pairwise binomial tests",
      "topics": [
        "pairwiseBinom",
        "pairwiseBinom,ANY-method",
        "pairwiseBinom,SingleCellExperiment-method",
        "pairwiseBinom,SummarizedExperiment-method"
      ]
    },
    {
      "page": "pairwiseTTests",
      "title": "Perform pairwise t-tests",
      "topics": [
        "pairwiseTTests",
        "pairwiseTTests,ANY-method",
        "pairwiseTTests,SingleCellExperiment-method",
        "pairwiseTTests,SummarizedExperiment-method"
      ]
    },
    {
      "page": "pairwiseWilcox",
      "title": "Perform pairwise Wilcoxon rank sum tests",
      "topics": [
        "pairwiseWilcox",
        "pairwiseWilcox,ANY-method",
        "pairwiseWilcox,SingleCellExperiment-method",
        "pairwiseWilcox,SummarizedExperiment-method"
      ]
    },
    {
      "page": "pseudoBulkDGE",
      "title": "Quickly perform pseudo-bulk DE analyses",
      "topics": [
        "pseudoBulkDGE",
        "pseudoBulkDGE,ANY-method",
        "pseudoBulkDGE,SummarizedExperiment-method"
      ]
    },
    {
      "page": "pseudoBulkSpecific",
      "title": "Label-specific pseudo-bulk DE",
      "topics": [
        "pseudoBulkSpecific",
        "pseudoBulkSpecific,ANY-method",
        "pseudoBulkSpecific,SummarizedExperiment-method"
      ]
    },
    {
      "page": "quickCluster",
      "title": "Quick clustering of cells",
      "topics": [
        "quickCluster",
        "quickCluster,ANY-method",
        "quickCluster,SummarizedExperiment-method"
      ]
    },
    {
      "page": "quickSubCluster",
      "title": "Quick and dirty subclustering",
      "topics": [
        "quickSubCluster",
        "quickSubCluster,ANY-method",
        "quickSubCluster,SingleCellExperiment-method",
        "quickSubCluster,SummarizedExperiment-method"
      ]
    },
    {
      "page": "rhoToPValue",
      "title": "Spearman's rho to a p-value",
      "topics": [
        "rhoToPValue"
      ]
    },
    {
      "page": "sandbag",
      "title": "Cell cycle phase training",
      "topics": [
        "sandbag",
        "sandbag,ANY-method",
        "sandbag,SummarizedExperiment-method"
      ]
    },
    {
      "page": "scaledColRanks",
      "title": "Compute scaled column ranks",
      "topics": [
        "scaledColRanks"
      ]
    },
    {
      "page": "scoreMarkers",
      "title": "Score marker genes",
      "topics": [
        "scoreMarkers",
        "scoreMarkers,ANY-method",
        "scoreMarkers,SingleCellExperiment-method",
        "scoreMarkers,SummarizedExperiment-method"
      ]
    },
    {
      "page": "summaryMarkerStats",
      "title": "Summary marker statistics",
      "topics": [
        "summaryMarkerStats",
        "summaryMarkerStats,ANY-method",
        "summaryMarkerStats,SummarizedExperiment-method"
      ]
    },
    {
      "page": "testLinearModel",
      "title": "Hypothesis tests with linear models",
      "topics": [
        "testLinearModel",
        "testLinearModel,ANY-method",
        "testLinearModel,SummarizedExperiment-method"
      ]
    }
  ],
  "_rundeps": [
    "abind",
    "assorthead",
    "beachmat",
    "BH",
    "Biobase",
    "BiocGenerics",
    "BiocNeighbors",
    "BiocParallel",
    "BiocSingular",
    "bluster",
    "cli",
    "cluster",
    "codetools",
    "cpp11",
    "DelayedArray",
    "dqrng",
    "edgeR",
    "formatR",
    "futile.logger",
    "futile.options",
    "generics",
    "GenomicRanges",
    "glue",
    "igraph",
    "IRanges",
    "irlba",
    "lambda.r",
    "lattice",
    "lifecycle",
    "limma",
    "locfit",
    "magrittr",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "metapod",
    "pkgconfig",
    "Rcpp",
    "rlang",
    "rsvd",
    "S4Arrays",
    "S4Vectors",
    "ScaledMatrix",
    "scuttle",
    "Seqinfo",
    "SingleCellExperiment",
    "sitmo",
    "snow",
    "SparseArray",
    "statmod",
    "SummarizedExperiment",
    "vctrs",
    "XVector"
  ],
  "_sysdeps": [
    {
      "shlib": "liblapack",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.32+ds-5",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "scran.Rmd",
      "filename": "scran.html",
      "title": "Using scran to analyze single-cell RNA-seq data",
      "author": "Aaron Lun",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Quick clustering",
        "Automated PC choice",
        "Detecting correlated genes",
        "Session information"
      ],
      "created": "2016-03-31 20:34:14",
      "modified": "2026-04-07 03:56:41",
      "commits": 38
    }
  ],
  "_score": 12.37523536224239,
  "_indexed": true,
  "_nocasepkg": "scran",
  "_universes": [
    "bioc",
    "ltla",
    "marionilab"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.41.1",
      "date": "2026-06-23T15:42:42.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "569d2f89d928451efa912f52f213af2f47c3a695",
      "fileid": "https://r2.ropensci.org/ca9c7aefc4759f395018c4ec70b8d9743efc6a8e2343fbb391ba079a1bc2feaf",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28035937292"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.41.1",
      "date": "2026-06-23T15:43:43.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "569d2f89d928451efa912f52f213af2f47c3a695",
      "fileid": "https://r2.ropensci.org/14116801d77cf30219efb39b3e7c9bd89d1534fa618f3ba139c8afe6150db911",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28035937292"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.41.1",
      "date": "2026-06-23T15:43:02.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "569d2f89d928451efa912f52f213af2f47c3a695",
      "fileid": "https://r2.ropensci.org/e2511c56c1269025e791e2b9342d6d2987e4e66a176bcc9917deb2195e4cd6b0",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28035937292"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.41.1",
      "date": "2026-06-23T15:44:28.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "569d2f89d928451efa912f52f213af2f47c3a695",
      "fileid": "https://r2.ropensci.org/0d03da8296585153a4f851e6261d602c9b448b4fedd5e553428de2b8a42d2428",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28035937292"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.41.1",
      "date": "2026-06-23T15:38:11.000Z",
      "arch": "aarch64",
      "commit": "569d2f89d928451efa912f52f213af2f47c3a695",
      "fileid": "https://r2.ropensci.org/3b22da3f342c7fb1543306e51415d6b4adff7f7532aad92699eb109f97bc4a36",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28035937292"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.41.1",
      "date": "2026-06-23T15:40:35.000Z",
      "arch": "x86_64",
      "commit": "569d2f89d928451efa912f52f213af2f47c3a695",
      "fileid": "https://r2.ropensci.org/0bc87e7fb481a6d93b856a5b2cd44c22ed78c09e664aafc8666b7cb5579903f3",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28035937292"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.41.1",
      "date": "2026-06-23T15:33:54.000Z",
      "arch": "aarch64",
      "commit": "569d2f89d928451efa912f52f213af2f47c3a695",
      "fileid": "https://r2.ropensci.org/f14911ba7286971286a7b4aef979d1736bd39b0366d493d031de00addb6998ee",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28035937292"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.41.1",
      "date": "2026-06-23T15:36:36.000Z",
      "arch": "x86_64",
      "commit": "569d2f89d928451efa912f52f213af2f47c3a695",
      "fileid": "https://r2.ropensci.org/e50141f4274946fc32a5a929b229e4730a8f47e2f06b2a03c7170535ceb99eab",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28035937292"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.41.1",
      "date": "2026-06-23T15:46:54.000Z",
      "arch": "emscripten",
      "commit": "569d2f89d928451efa912f52f213af2f47c3a695",
      "fileid": "https://r2.ropensci.org/ef0f82422bc13437205e77c28e5af8b2a39cb5140b938e5c371a2f62f50b2786",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28035937292"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.41.1",
      "date": "2026-06-23T15:42:35.000Z",
      "arch": "x86_64",
      "commit": "569d2f89d928451efa912f52f213af2f47c3a695",
      "fileid": "https://r2.ropensci.org/5a4ec7ac1addc0b048f9f7c95fe658f3f750243dfde69bad652156cf8579c4d6",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28035937292"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.41.1",
      "date": "2026-06-23T15:43:13.000Z",
      "arch": "x86_64",
      "commit": "569d2f89d928451efa912f52f213af2f47c3a695",
      "fileid": "https://r2.ropensci.org/15ba3b50ecfe47f4d218b9f4409c6bce79b7c61534528a206e8de8b8b3799fdc",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28035937292"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.41.1",
      "date": "2026-06-23T15:43:08.000Z",
      "arch": "x86_64",
      "commit": "569d2f89d928451efa912f52f213af2f47c3a695",
      "fileid": "https://r2.ropensci.org/763799c8fa2a4465252c07efb74217f0ca6097c7f1365764ee01d7ad6c612f44",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28035937292"
    }
  ]
}