{ "_id": "6a1aeb161d7bb097a09f3bdf", "Package": "scifer", "Type": "Package", "Title": "Scifer: Single-Cell Immunoglobulin Filtering of Sanger Sequences", "Version": "1.15.0", "Authors@R": "c(person(given = \"Rodrigo\",\nfamily = \"Arcoverde Cerveira\",\nrole = c(\"aut\", \"cre\", \"cph\"),\nemail = \"rodrigo.arcoverdi@gmail.com\",\ncomment = c(ORCID = \"0000-0002-1145-2534\")),\nperson(given = \"Marcel\",\nfamily = \"Martin\",\nrole = c(\"ctb\")),\nperson(given = \"Matthew James\",\nfamily = \"Hinchcliff\",\nrole = c(\"ctb\")),\nperson(given = \"Sebastian\",\nfamily = \"Ols\",\nrole = c(\"aut\", \"dtc\"),\ncomment = c(ORCID = \"0000-0001-9784-7176\")),\nperson(given = \"Karin\",\nfamily = \"Loré\",\nrole = c(\"dtc\", \"ths\", \"fnd\"),\ncomment = c(ORCID = \"0000-0001-7679-9494\")))", "URL": "https://github.com/rodrigarc/scifer", "BugReports": "https://github.com/rodrigarc/scifer/issues", "Description": "Have you ever index sorted cells in a 96 or 384-well plate\nand then sequenced using Sanger sequencing? If so, you probably\nhad some struggles to either check the electropherogram of each\ncell sequenced manually, or when you tried to identify which\ncell was sorted where after sequencing the plate. Scifer was\ndeveloped to solve this issue by performing basic quality\ncontrol of Sanger sequences and merging flow cytometry data\nfrom probed single-cell sorted B cells with sequencing data.\nscifer can export summary tables, 'fasta' files,\nelectropherograms for visual inspection, and generate reports.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "biocViews": "Preprocessing, QualityControl, SangerSeq, Sequencing,\nSoftware, FlowCytometry, SingleCell", "RoxygenNote": "7.3.2", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "StagedInstall": "no", "Config/pak/sysreqs": "cmake libfontconfig1-dev libfreetype6-dev\nlibfribidi-dev make libharfbuzz-dev libicu-dev libpng-dev\nlibuv1-dev libxml2-dev libssl-dev python3 zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:59:01 UTC", "RemoteUrl": "https://github.com/bioc/scifer", "RemoteRef": "HEAD", "RemoteSha": "75c51fad973f812b19d21d56f88f86660f3370cc", "NeedsCompilation": "no", 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