{ "_id": "6aca1821fe5cc25786e849cd", "Package": "scanMiRData", "Type": "Package", "Title": "miRNA Affinity models for the scanMiR package", "Version": "1.19.0", "Date": "2023-07-03", "Authors@R": "c(\nperson(\"Pierre-Luc\", \"Germain\", email=\"pierre-luc.germain@hest.ethz.ch\",\nrole=c(\"cre\",\"aut\"), comment=c(ORCID=\"0000-0003-3418-4218\")),\nperson(\"Michael\", \"Soutschek\", email=\"michael.soutschek@hest.ethz.ch\", role=\"aut\"),\nperson(\"Fridolin\", \"Gross\", email=\"fridolin.gross@u-bordeaux.fr\", role=\"aut\"))", "Description": "This package contains companion data to the scanMiR\npackage. It contains `KdModel` (miRNA 12-mer binding affinity\nmodels) collections corresponding to all human, mouse and rat\nmirbase miRNAs. See the scanMiR package for details.", "BiocType": "ExperimentData", "License": "GPL-3", "VignetteBuilder": "knitr", "RoxygenNote": "7.1.1", "biocViews": "miRNAData, ExperimentData, Homo_sapiens_Data,\nMus_musculus_Data, Rattus_norvegicus_Data", "Config/pak/sysreqs": "libicu-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:35:29 UTC", "RemoteUrl": "https://github.com/bioc/scanMiRData", "RemoteRef": "HEAD", "RemoteSha": "6a5e47ea3e5e706db4dfab33d6e47379fda2da02", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-10 10:42:53 UTC", "User": "root" }, "Author": "Pierre-Luc Germain [cre, aut] (ORCID:\n),\nMichael Soutschek [aut],\nFridolin Gross [aut]", "Maintainer": "Pierre-Luc Germain ", "_user": "bioc", "_type": "src", "_file": "scanMiRData_1.19.0.tar.gz", "_fileid": "https://r2.ropensci.org/d9a15aa88cc779b5145dee319c02d253ffdfd85ebc435f5fd72bdf4c4b586863", "_filesize": 16787062, "_sha256": "d9a15aa88cc779b5145dee319c02d253ffdfd85ebc435f5fd72bdf4c4b586863", "_expires": "2027-01-18T10:49:02.000Z", "_created": "2026-10-10T10:42:53.000Z", "_published": "2026-10-10T10:49:05.528Z", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/38045643035", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 1, "warning": 2, "note": 6 }, "_upstream": "https://github.com/bioc/scanMiRData", "_commit": { "id": "6a5e47ea3e5e706db4dfab33d6e47379fda2da02", "author": "lshep ", "committer": "lshep ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379729 }, "_maintainer": { "name": "Pierre-Luc Germain", "email": "pierre-luc.germain@hest.ethz.ch", "login": "plger", "orcid": "0000-0003-3418-4218", "description": "like sailors who on the open sea must reconstruct their ship but are never able to start afresh from the bottom...", "uuid": 9786697 }, "_distro": "resolute", "_jobs": [ { "job": 114195364825, "time": 133, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "11666563745" }, { "job": 114195364858, "time": 269, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11666624006" }, { "job": 114195364855, "time": 270, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11666818694" }, { "job": 114194551071, "time": 282, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11667129450" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0", "role": "Depends" }, { "package": "scanMiR", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 1, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.19.0", "bioc": "3.24", "repository": "data/experiment" }, { "branch": "release", "version": "1.18.0", "bioc": "3.23", "repository": "data/experiment" } ], "_topics": [ "mirnadata", "experimentdata", "homo_sapiens_data", "mus_musculus_data", "rattus_norvegicus_data", "datapkg" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_searchresults": 41, "_datapkg": true, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/readme.html", "extra/readme.md", "extra/scanMiRData.html" ], "_cranurl": false, "_exports": [ "getKdModels" ], "_datasets": [ { "name": "hsa", "title": "KdModelList for human miRNAs", "object": "hsa", "file": "hsa.RData", "class": [ "KdModelList" ], "fields": [], "table": true, "tojson": true }, { "name": "mmu", "title": "KdModelList for mouse miRNAs", "object": "mmu", "file": "mmu.RData", "class": [ "KdModelList" ], "fields": [], "table": true, "tojson": true }, { "name": "rno", "title": "KdModelList for rat miRNAs", "object": "rno", "file": "rno.RData", "class": [ "KdModelList" ], "fields": [], "table": true, "tojson": true } ], "_help": [ { "page": "getKdModels", "title": "getKdModels", "topics": [ "getKdModels" ] }, { "page": "KdModels-hsa", "title": "KdModelList for human miRNAs", "topics": [ "hsa", "KdModels-hsa", "KdModels-hsa," ] }, { "page": "KdModels-mmu", "title": "KdModelList for mouse miRNAs", "topics": [ "KdModels-mmu", "KdModels-mmu,", "mmu" ] }, { "page": "KdModels-rno", "title": "KdModelList for rat miRNAs", "topics": [ "KdModels-rno", "KdModels-rno,", "rno" ] } ], "_readme": "https://github.com/bioc/scanMiRData/raw/HEAD/README.md", "_rundeps": [ "BH", "BiocGenerics", "BiocParallel", "Biostrings", "cli", "codetools", "cowplot", "cpp11", "crayon", "data.table", "farver", "formatR", "futile.logger", "futile.options", "generics", "GenomicRanges", "ggplot2", "glue", "gtable", "IRanges", "isoband", "labeling", "lambda.r", "lifecycle", "pwalign", "R6", "RColorBrewer", "rlang", "S4Vectors", "S7", "scales", "scanMiR", "Seqinfo", "seqLogo", "snow", "stringi", "vctrs", "viridisLite", "withr", "XVector" ], "_vignettes": [ { "source": "scanMiRData.Rmd", "filename": "scanMiRData.html", "title": "scanMiRData", "author": "Pierre-Luc Germain, Michael Soutschek, Fridolin Groß", "engine": "knitr::rmarkdown", "headings": [ "Loading the collections", "Session info" ], "created": "2021-04-14 06:36:03", "modified": "2021-04-14 06:36:03", "commits": 1 } ], "_score": 5.089905111439398, "_indexed": true, "_nocasepkg": "scanmirdata", "_universes": [ "bioc", "plger" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.19.0", "date": "2026-10-10T10:47:26.000Z", "distro": "resolute", "commit": "6a5e47ea3e5e706db4dfab33d6e47379fda2da02", "fileid": "https://r2.ropensci.org/e2e0829d6a8c4efdf86f3325356759edcd6bb7b7df2f8709cbdac45a4bfd2020", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38045643035" }, { "r": "4.6.1", "os": "linux", "version": "1.19.0", "date": "2026-10-10T10:47:36.000Z", "distro": "resolute", "commit": "6a5e47ea3e5e706db4dfab33d6e47379fda2da02", "fileid": "https://r2.ropensci.org/12bd65af43d36f56752684bd61bf871f7310add368ac3344e0541749492b60f9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38045643035" } ] }