{ "_id": "6a1ab0391d7bb097a09d560f", "Package": "scanMiRApp", "Type": "Package", "Title": "scanMiR shiny application", "Version": "1.19.0", "Date": "2026-02-25", "Authors@R": "c(\nperson(\"Pierre-Luc\", \"Germain\", email=\"pierre-luc.germain@hest.ethz.ch\",\nrole=c(\"cre\",\"aut\"), comment=c(ORCID=\"0000-0003-3418-4218\")),\nperson(\"Michael\", \"Soutschek\", email=\"michael.soutschek@hest.ethz.ch\", role=\"aut\"),\nperson(\"Fridolin\", \"Gross\", email=\"fridolin.gross@hest.ethz.ch\", role=\"ctb\"))", "Description": "A shiny interface to the scanMiR package. The application\nenables the scanning of transcripts and custom sequences for\nmiRNA binding sites, the visualization of KdModels and binding\nresults, as well as browsing predicted repression data. In\naddition contains the IndexedFst class for fast indexed reading\nof large GenomicRanges or data.frames, and some utilities for\nfacilitating scans and identifying enriched miRNA-target pairs.", "License": "GPL-3", "VignetteBuilder": "knitr", "RoxygenNote": "7.2.3", "biocViews": "miRNA, SequenceMatching, GUI, ShinyApps", "Config/testthat/edition": "3", "Config/pak/sysreqs": "cmake make libbz2-dev libicu-dev liblzma-dev\nlibpng-dev libuv1-dev libxml2-dev libssl-dev xz-utils\nzlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:56:38 UTC", "RemoteUrl": "https://github.com/bioc/scanMiRApp", "RemoteRef": "HEAD", "RemoteSha": "7b6d92e1674ff994a2320cce49f4bdb77441fd55", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 07:02:49 UTC", "User": "root" }, "Author": "Pierre-Luc Germain [cre, aut] (ORCID:\n),\nMichael Soutschek [aut],\nFridolin Gross [ctb]", "Maintainer": "Pierre-Luc Germain ", "MD5sum": "20568a8b2939d8325196565835a78199", 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"time": 1777380998 }, "_maintainer": { "name": "Pierre-Luc Germain", "email": "pierre-luc.germain@hest.ethz.ch", "login": "plger", "orcid": "0000-0003-3418-4218", "description": "like sailors who on the open sea must reconstruct their ship but are never able to start afresh from the bottom...", "uuid": 9786697 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0", "role": "Depends" }, { "package": "scanMiR", "role": "Depends" }, { "package": "AnnotationDbi", "role": "Imports" }, { "package": "AnnotationFilter", "role": "Imports" }, { "package": "AnnotationHub", "role": "Imports" }, { "package": "BiocParallel", "role": "Imports" }, { "package": "Biostrings", "role": "Imports" }, { "package": "data.table", "role": "Imports" }, { "package": "digest", "role": "Imports" }, { "package": "DT", "role": "Imports" }, { "package": "ensembldb", "role": "Imports" }, { "package": "fst", "role": "Imports" }, { "package": "GenomeInfoDb", "role": "Imports" 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