{ "_id": "6ac8d95bde46216d5edd85f4", "Package": "scPassport", "Title": "Passport System for Single-Cell Objects", "Version": "1.1.0", "Authors@R": "person(\"Sedat\", \"Kacar\",\nemail = \"sedatkacar56@gmail.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-0671-8529\"))", "Description": "Stamps Seurat, SingleCellExperiment, and\nSummarizedExperiment objects with a persistent metadata\npassport. For Seurat objects the passport is stored in the misc\nslot; for SingleCellExperiment and SummarizedExperiment objects\nit is stored in the metadata slot. Tracks animal info,\nexperiment details, lineage (parent/child relationships), RDS\nregistry numbers, processing logs, and custom fields. Includes\nan interactive Shiny gadget to fill and update the passport,\nand a read mode to print the full passport to console. The\npassport persists inside the RDS file with no external files\nneeded.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "biocViews": "SingleCell, DataImport, Visualization, Infrastructure", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "BugReports": "https://github.com/sedatkacar56/scPassport/issues", "URL": "https://github.com/sedatkacar56/scPassport", "Config/pak/sysreqs": "cmake make libuv1-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 13:06:46 UTC", "RemoteUrl": "https://github.com/bioc/scPassport", "RemoteRef": "HEAD", "RemoteSha": "b4e92ef543eb8123f0086dcad523c4c3d06afb54", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-10-09 12:02:49 UTC", "User": "root" }, "Author": "Sedat Kacar [aut, cre] (ORCID: )", "Maintainer": "Sedat Kacar ", "_user": "bioc", "_type": "src", "_file": "scPassport_1.1.0.tar.gz", "_fileid": "https://r2.ropensci.org/7ffde2fee880cdcbd0418da3ca22fd81990911544f501d8b23dbc163a7fc2c5f", "_filesize": 122215, "_sha256": "7ffde2fee880cdcbd0418da3ca22fd81990911544f501d8b23dbc163a7fc2c5f", "_expires": "2027-01-17T12:08:57.000Z", "_created": "2026-10-09T12:02:49.000Z", "_published": "2026-10-09T12:08:58.963Z", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/37927112826", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 0, "warning": 0, "note": 5 }, "_upstream": "https://github.com/bioc/scPassport", "_commit": { "id": "b4e92ef543eb8123f0086dcad523c4c3d06afb54", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777381606 }, "_maintainer": { "name": "Sedat Kacar", "email": "sedatkacar56@gmail.com", "login": "sedatkacar56", "linkedin": "in/sedat-kacar-phd-6863b812b", "description": "", "uuid": 119811739, "orcid": "0000-0002-0671-8529" }, "_distro": "resolute", "_jobs": [ { "job": 113810032617, "time": 176, "config": "bioc-checks", "r": "4.6.1", "check": "NOTE", "artifact": "11615295521" }, { "job": 113810032917, "time": 203, "config": "linux-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "11614214958" }, { "job": 113810032844, "time": 241, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11615360420" }, { "job": 113810032907, "time": 157, "config": "linux-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "11614383984" }, { "job": 113810032781, "time": 227, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11614995905" }, { "job": 113810033125, "time": 119, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "11614801893" }, { "job": 113810032985, "time": 317, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "11614459250" }, { "job": 113810032899, "time": 156, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "11614129867" }, { "job": 113810032878, "time": 324, "config": "macos-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11614519229" }, { "job": 113808692276, "time": 229, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11614771479" }, { "job": 113810032704, "time": 152, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11614159855" }, { "job": 113810033085, "time": 289, "config": "windows-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "11615340705" }, { "job": 113810033087, "time": 257, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11615045875" }, { "job": 113810033056, "time": 145, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "11614980726" }, { "job": 113810032854, "time": 213, "config": "windows-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "11614807026" }, { "job": 113810033129, "time": 144, "config": "windows-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11614731967" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.3", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "shiny", "role": "Imports" }, { "package": "miniUI", "role": "Imports" }, { "package": "Rcpp", "role": "Imports" }, { "package": "S4Vectors", "role": "Imports" }, { "package": "Seurat", "role": "Suggests" }, { "package": "SingleCellExperiment", "role": "Suggests" }, { "package": "SummarizedExperiment", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-12", "n": 6 }, { "week": "2026-13", "n": 6 }, { "week": "2026-14", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.1.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.0.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "singlecell", "dataimport", "visualization", "infrastructure", "cpp" ], "_stars": 3, "_contributors": [ { "user": "sedatkacar56", "count": 23, "uuid": 119811739 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 475, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 301, "source": "https://www.bioconductor.org/packages/stats/bioc/scPassport" }, "_devurl": "https://github.com/sedatkacar56/scpassport", "_searchresults": 0, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/scPassport.html", "LICENSE" ], "_homeurl": "https://github.com/sedatkacar56/scpassport", "_realowner": "bioc", "_cranurl": false, "_exports": [ "log_step", "read_passport", "scPassport" ], "_help": [ { "page": "log_step", "title": "Log a Processing Step to a Seurat, SingleCellExperiment, or SummarizedExperiment Object", "topics": [ "log_step" ] }, { "page": "read_passport", "title": "Read the Passport of a Seurat, SingleCellExperiment, or SummarizedExperiment Object", "topics": [ "read_passport" ] }, { "page": "scPassport", "title": "scPassport: Passport System for Single-Cell Objects", "topics": [ "scPassport-package", "scPassport" ] } ], "_readme": "https://github.com/bioc/scPassport/raw/HEAD/README.md", "_rundeps": [ "base64enc", "BiocGenerics", "bslib", "cachem", "cli", "commonmark", "digest", "fastmap", "fontawesome", "fs", "generics", "glue", "htmltools", "httpuv", "jquerylib", "jsonlite", "later", "lifecycle", "magrittr", "memoise", "mime", "miniUI", "otel", "promises", "R6", "rappdirs", "Rcpp", "rlang", "S4Vectors", "sass", "shiny", "sourcetools", "withr", "xtable" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "scPassport.Rmd", "filename": "scPassport.html", "title": "Getting Started with scPassport", "author": "Sedat Kacar", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Installation", "Quick Start with SummarizedExperiment", "Load the package", "Create a minimal object", "Check passport on unstamped object", "Log processing steps", "Read the processing log", "Stamping with interactive popup (Seurat workflow)", "Logging Processing Steps", "Custom Fields", "Passport Fields Reference", "Identity", "Animal Info", "Experiment Info", "Lineage", "Session Info" ], "created": "2026-03-28 02:46:39", "modified": "2026-03-30 16:45:28", "commits": 3 } ], "_score": 4.778151250383644, "_indexed": true, "_nocasepkg": "scpassport", "_universes": [ "bioc", "sedatkacar56" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.0", "date": "2026-10-09T12:06:07.000Z", "distro": "resolute", "arch": "aarch64", "commit": "b4e92ef543eb8123f0086dcad523c4c3d06afb54", "fileid": "https://r2.ropensci.org/477d578535a807be306e80f97cfc4f2caef04121c74b0d86e6d8c9f1840e20b3", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37927112826" }, { "r": "4.7.0", "os": "linux", "version": "1.1.0", "date": "2026-10-09T12:06:31.000Z", "distro": "resolute", "arch": "x86_64", "commit": "b4e92ef543eb8123f0086dcad523c4c3d06afb54", "fileid": "https://r2.ropensci.org/914a859af26d3995c15d2b31b3d705979c7bfa68c9a60820f95ac47bd394ed13", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37927112826" }, { "r": "4.6.1", "os": "linux", "version": "1.1.0", "date": "2026-10-09T12:05:25.000Z", "distro": "resolute", "arch": "aarch64", "commit": "b4e92ef543eb8123f0086dcad523c4c3d06afb54", "fileid": "https://r2.ropensci.org/c10245c8f9ac3b95e7b0b6642f99a7b6243267e54c41b1a2270cbdf35adfc7fe", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37927112826" }, { "r": "4.6.1", "os": "linux", "version": "1.1.0", "date": "2026-10-09T12:06:24.000Z", "distro": "resolute", "arch": "x86_64", "commit": "b4e92ef543eb8123f0086dcad523c4c3d06afb54", "fileid": "https://r2.ropensci.org/f58ac89b97c4f422e2f32b31805101f916cfa0aac0852c9b4b97935bf031a6a4", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37927112826" }, { "r": "4.5.3", "os": "mac", "version": "1.1.0", "date": "2026-10-09T12:04:50.000Z", "arch": "aarch64", "commit": "b4e92ef543eb8123f0086dcad523c4c3d06afb54", "fileid": "https://r2.ropensci.org/37662c91bd3146bcebd519a43968c23f5cd53104a208734580d97958c5518524", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37927112826" }, { "r": "4.5.3", "os": "mac", "version": "1.1.0", "date": "2026-10-09T12:07:21.000Z", "arch": "x86_64", "commit": "b4e92ef543eb8123f0086dcad523c4c3d06afb54", "fileid": "https://r2.ropensci.org/7663497828dac0466c70b00e0c6b998034fefba869fb6693399c518ee76fa7bb", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37927112826" }, { "r": "4.6.1", "os": "mac", "version": "1.1.0", "date": "2026-10-09T12:05:05.000Z", "arch": "aarch64", "commit": "b4e92ef543eb8123f0086dcad523c4c3d06afb54", "fileid": "https://r2.ropensci.org/edbca611c2f839b09821c34fcd16af49adfe37794c2d80468d7354f76c77df4c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37927112826" }, { "r": "4.6.1", "os": "mac", "version": "1.1.0", "date": "2026-10-09T12:06:54.000Z", "arch": "x86_64", "commit": "b4e92ef543eb8123f0086dcad523c4c3d06afb54", "fileid": "https://r2.ropensci.org/4271d67f79eac3be66cef737861cd4ec5a5236921c0a92ad975716966169ef11", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37927112826" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.0", "date": "2026-10-09T12:05:43.000Z", "arch": "emscripten", "commit": "b4e92ef543eb8123f0086dcad523c4c3d06afb54", "fileid": "https://r2.ropensci.org/80485e5ebe99281a7a23562532e673bfefda9b26132863ed801c25b8747e2237", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37927112826" }, { "r": "4.7.0", "os": "win", "version": "1.1.0", "date": "2026-10-09T12:07:11.000Z", "arch": "aarch64", "commit": "b4e92ef543eb8123f0086dcad523c4c3d06afb54", "fileid": "https://r2.ropensci.org/2f7d4341f57411da390d692d6ce653c805b9470eec4be1ada8e7205703eccf26", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37927112826" }, { "r": "4.7.0", "os": "win", "version": "1.1.0", "date": "2026-10-09T12:05:56.000Z", "arch": "x86_64", "commit": "b4e92ef543eb8123f0086dcad523c4c3d06afb54", "fileid": "https://r2.ropensci.org/0f3bfd9e376e9cfd491c465fde874647cbcbf9bdc74af8f77fe6e737789345e6", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37927112826" }, { "r": "4.5.3", "os": "win", "version": "1.1.0", "date": "2026-10-09T12:04:39.000Z", "arch": "x86_64", "commit": "b4e92ef543eb8123f0086dcad523c4c3d06afb54", "fileid": "https://r2.ropensci.org/a0c0bbfba0d065d91393860166e9b5b96752d77b56190593849462926f26d1f9", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37927112826" }, { "r": "4.6.1", "os": "win", "version": "1.1.0", "date": "2026-10-09T12:06:04.000Z", "arch": "aarch64", "commit": "b4e92ef543eb8123f0086dcad523c4c3d06afb54", "fileid": "https://r2.ropensci.org/5ad1fefb3b389faaa360f6f034ed2e29216e5a8953d628ee493d97c392049b0f", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37927112826" }, { "r": "4.6.1", "os": "win", "version": "1.1.0", "date": "2026-10-09T12:04:35.000Z", "arch": "x86_64", "commit": "b4e92ef543eb8123f0086dcad523c4c3d06afb54", "fileid": "https://r2.ropensci.org/19b795e30fd1db3c151305ff14dc078721c9f6f06ba81a7a1496c1000f4ac9ce", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37927112826" } ] }