{
  "_id": "6a494a6af6c47c4419498aba",
  "Package": "scPassport",
  "Title": "Passport System for Single-Cell Objects",
  "Version": "1.1.0",
  "Authors@R": "person(\"Sedat\", \"Kacar\",\nemail = \"sedatkacar56@gmail.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-0671-8529\"))",
  "Description": "Stamps Seurat, SingleCellExperiment, and\nSummarizedExperiment objects with a persistent metadata\npassport. For Seurat objects the passport is stored in the misc\nslot; for SingleCellExperiment and SummarizedExperiment objects\nit is stored in the metadata slot. Tracks animal info,\nexperiment details, lineage (parent/child relationships), RDS\nregistry numbers, processing logs, and custom fields. Includes\nan interactive Shiny gadget to fill and update the passport,\nand a read mode to print the full passport to console. The\npassport persists inside the RDS file with no external files\nneeded.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "biocViews": "SingleCell, DataImport, Visualization, Infrastructure",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "BugReports": "https://github.com/sedatkacar56/scPassport/issues",
  "URL": "https://github.com/sedatkacar56/scPassport",
  "Config/pak/sysreqs": "cmake make libuv1-dev zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 13:06:46 UTC",
  "RemoteUrl": "https://github.com/bioc/scPassport",
  "RemoteRef": "HEAD",
  "RemoteSha": "b4e92ef543eb8123f0086dcad523c4c3d06afb54",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-07-03 16:06:06 UTC",
    "User": "root"
  },
  "Author": "Sedat Kacar [aut, cre] (ORCID: <https://orcid.org/0000-0002-0671-8529>)",
  "Maintainer": "Sedat Kacar <sedatkacar56@gmail.com>",
  "_user": "bioc",
  "_type": "src",
  "_file": "scPassport_1.1.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/b4b74015b8b4791d97a993fbebefc2f405fd8a2c4a7178e28d03e881d2b50148",
  "_filesize": 123892,
  "_sha256": "b4b74015b8b4791d97a993fbebefc2f405fd8a2c4a7178e28d03e881d2b50148",
  "_expires": "2026-10-12T18:01:13.000Z",
  "_created": "2026-07-03T16:06:06.000Z",
  "_published": "2026-07-04T18:01:14.819Z",
  "_bioccheck": {
    "error": 0,
    "warning": 0,
    "note": 5
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28671475118",
  "_status": "success",
  "_upstream": "https://github.com/bioc/scPassport",
  "_commit": {
    "id": "b4e92ef543eb8123f0086dcad523c4c3d06afb54",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777381606
  },
  "_maintainer": {
    "name": "Sedat Kacar",
    "email": "sedatkacar56@gmail.com",
    "login": "sedatkacar56",
    "linkedin": "in/sedat-kacar-phd-6863b812b",
    "description": "",
    "uuid": 119811739,
    "orcid": "0000-0002-0671-8529"
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 85154456408,
      "time": 198,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8070901041"
    },
    {
      "job": 85154456632,
      "time": 210,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8070905574"
    },
    {
      "job": 85154456594,
      "time": 235,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8070911144"
    },
    {
      "job": 85154456608,
      "time": 212,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8070905181"
    },
    {
      "job": 85154456541,
      "time": 263,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8070918883"
    },
    {
      "job": 85154456572,
      "time": 122,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8070879817"
    },
    {
      "job": 85154456728,
      "time": 379,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8070951564"
    },
    {
      "job": 85154456538,
      "time": 168,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8070892792"
    },
    {
      "job": 85154456588,
      "time": 384,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8070953059"
    },
    {
      "job": 85154456369,
      "time": 251,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8070843859"
    },
    {
      "job": 85154456393,
      "time": 206,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8070903107"
    },
    {
      "job": 85154456427,
      "time": 132,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8070882743"
    },
    {
      "job": 85154456642,
      "time": 156,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8070889807"
    },
    {
      "job": 85154456478,
      "time": 168,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8070892841"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.3",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "shiny",
      "role": "Imports"
    },
    {
      "package": "miniUI",
      "role": "Imports"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "S4Vectors",
      "role": "Imports"
    },
    {
      "package": "Seurat",
      "role": "Suggests"
    },
    {
      "package": "SingleCellExperiment",
      "role": "Suggests"
    },
    {
      "package": "SummarizedExperiment",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-12",
      "n": 6
    },
    {
      "week": "2026-13",
      "n": 6
    },
    {
      "week": "2026-14",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.1.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.0.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "singlecell",
    "dataimport",
    "visualization",
    "infrastructure",
    "cpp"
  ],
  "_stars": 3,
  "_contributors": [
    {
      "user": "sedatkacar56",
      "count": 23,
      "uuid": 119811739
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 445,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_devurl": "https://github.com/sedatkacar56/scpassport",
  "_searchresults": 0,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/scPassport.html",
    "LICENSE",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/sedatkacar56/scpassport",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "log_step",
    "read_passport",
    "scPassport"
  ],
  "_help": [
    {
      "page": "log_step",
      "title": "Log a Processing Step to a Seurat, SingleCellExperiment, or SummarizedExperiment Object",
      "topics": [
        "log_step"
      ]
    },
    {
      "page": "read_passport",
      "title": "Read the Passport of a Seurat, SingleCellExperiment, or SummarizedExperiment Object",
      "topics": [
        "read_passport"
      ]
    },
    {
      "page": "scPassport",
      "title": "scPassport: Passport System for Single-Cell Objects",
      "topics": [
        "scPassport-package",
        "scPassport"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/scPassport/raw/HEAD/README.md",
  "_rundeps": [
    "base64enc",
    "BiocGenerics",
    "bslib",
    "cachem",
    "cli",
    "commonmark",
    "digest",
    "fastmap",
    "fontawesome",
    "fs",
    "generics",
    "glue",
    "htmltools",
    "httpuv",
    "jquerylib",
    "jsonlite",
    "later",
    "lifecycle",
    "magrittr",
    "memoise",
    "mime",
    "miniUI",
    "otel",
    "promises",
    "R6",
    "rappdirs",
    "Rcpp",
    "rlang",
    "S4Vectors",
    "sass",
    "shiny",
    "sourcetools",
    "withr",
    "xtable"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "scPassport.Rmd",
      "filename": "scPassport.html",
      "title": "Getting Started with scPassport",
      "author": "Sedat Kacar",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Installation",
        "Quick Start with SummarizedExperiment",
        "Load the package",
        "Create a minimal object",
        "Check passport on unstamped object",
        "Log processing steps",
        "Read the processing log",
        "Stamping with interactive popup (Seurat workflow)",
        "Logging Processing Steps",
        "Custom Fields",
        "Passport Fields Reference",
        "Identity",
        "Animal Info",
        "Experiment Info",
        "Lineage",
        "Session Info"
      ],
      "created": "2026-03-28 02:46:39",
      "modified": "2026-03-30 16:45:28",
      "commits": 3
    }
  ],
  "_score": 4.778151250383644,
  "_indexed": true,
  "_nocasepkg": "scpassport",
  "_universes": [
    "bioc",
    "sedatkacar56"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.0",
      "date": "2026-07-03T16:09:31.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "b4e92ef543eb8123f0086dcad523c4c3d06afb54",
      "fileid": "https://r2.ropensci.org/aa63ed66ea1a7066470866ac03dca69ef85a9212479365166507b02b1a340b50",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28671475118"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.0",
      "date": "2026-07-03T16:09:45.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "b4e92ef543eb8123f0086dcad523c4c3d06afb54",
      "fileid": "https://r2.ropensci.org/71fd7e17a5aab2da44f9d9990fb864a6bc631a7e41686396a0c1acfd7a19f820",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28671475118"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.1.0",
      "date": "2026-07-03T16:09:30.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "b4e92ef543eb8123f0086dcad523c4c3d06afb54",
      "fileid": "https://r2.ropensci.org/61b2bfe4496b6b9b7a07c5272eb97cbba58bc64a668b76aac84816362b4c167e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28671475118"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.1.0",
      "date": "2026-07-03T16:10:14.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "b4e92ef543eb8123f0086dcad523c4c3d06afb54",
      "fileid": "https://r2.ropensci.org/1fc7601a7623dfbda7684c52ce412d699adcd8f71b3cb87e02bc9cae327e1fa3",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28671475118"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.1.0",
      "date": "2026-07-03T16:08:03.000Z",
      "arch": "aarch64",
      "commit": "b4e92ef543eb8123f0086dcad523c4c3d06afb54",
      "fileid": "https://r2.ropensci.org/edd019ebef34c4e04cf45d0662351f155fc68cafd967223e6c421a9b7e5a88c6",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28671475118"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.1.0",
      "date": "2026-07-03T16:11:08.000Z",
      "arch": "x86_64",
      "commit": "b4e92ef543eb8123f0086dcad523c4c3d06afb54",
      "fileid": "https://r2.ropensci.org/bc6513b241e706c1a6d4be385f48d3dd5b93fef5058e9f1137aa5df933d1dede",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28671475118"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.1.0",
      "date": "2026-07-03T16:08:29.000Z",
      "arch": "aarch64",
      "commit": "b4e92ef543eb8123f0086dcad523c4c3d06afb54",
      "fileid": "https://r2.ropensci.org/a3fa6ff552c9fc7aa7c0ab2d22474cdffd4c2513f42795e55aa5f4edcb91d44b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28671475118"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.1.0",
      "date": "2026-07-03T16:11:08.000Z",
      "arch": "x86_64",
      "commit": "b4e92ef543eb8123f0086dcad523c4c3d06afb54",
      "fileid": "https://r2.ropensci.org/b11cfdd145fb56df06cb2fad8547783631eb286dda8c183e848e2e49d8ad7654",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28671475118"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.1.0",
      "date": "2026-07-03T16:09:47.000Z",
      "arch": "emscripten",
      "commit": "b4e92ef543eb8123f0086dcad523c4c3d06afb54",
      "fileid": "https://r2.ropensci.org/84fd02fd2bd4de95d733f0ed010b5d96bb00a9b53c0bc1208d30ab3fea7705c1",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28671475118"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.1.0",
      "date": "2026-07-03T16:07:42.000Z",
      "arch": "x86_64",
      "commit": "b4e92ef543eb8123f0086dcad523c4c3d06afb54",
      "fileid": "https://r2.ropensci.org/db7545461877391291d51406098a0cbca0b313b51811e5104923b427302a255e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28671475118"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.1.0",
      "date": "2026-07-03T16:08:07.000Z",
      "arch": "x86_64",
      "commit": "b4e92ef543eb8123f0086dcad523c4c3d06afb54",
      "fileid": "https://r2.ropensci.org/326b424ba7df0939c284d0799f9e874742b5ff75a7ba00feaab7feb6a9424acb",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28671475118"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.1.0",
      "date": "2026-07-03T16:08:10.000Z",
      "arch": "x86_64",
      "commit": "b4e92ef543eb8123f0086dcad523c4c3d06afb54",
      "fileid": "https://r2.ropensci.org/2f11b17a43b04bf93357144aff753935067034103e1e14dbce4188c6f18d56e5",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28671475118"
    }
  ]
}