{ "_id": "6a493efaa19c9318096e7e3c", "Package": "scDesign3", "Type": "Package", "Title": "A unified framework of realistic in silico data generation and\nstatistical model inference for single-cell and spatial omics", "Version": "1.11.0", "Authors@R": "c(person(\"Dongyuan\", \"Song\", , \"dongyuansong@ucla.edu\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-1114-1215\")),\nperson(\"Qingyang\", \"Wang\", , \"qw802@g.ucla.edu\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-1051-609X\")),\nperson(\"Chenxin\", \"Jiang\", , \"cflorajiang@g.ucla.edu\", role = c(\"aut\"),\ncomment = c(ORCID = \"0009-0005-7369-4116\")))", "Description": "We present a statistical simulator, scDesign3, to generate\nrealistic single-cell and spatial omics data, including various\ncell states, experimental designs, and feature modalities, by\nlearning interpretable parameters from real data. Using a\nunified probabilistic model for single-cell and spatial omics\ndata, scDesign3 infers biologically meaningful parameters;\nassesses the goodness-of-fit of inferred cell clusters,\ntrajectories, and spatial locations; and generates in silico\nnegative and positive controls for benchmarking computational\ntools.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "LazyData": "false", "biocViews": "Software, SingleCell, Sequencing, GeneExpression, Spatial", "URL": "https://github.com/SONGDONGYUAN1994/scDesign3", "BugReports": "https://github.com/SONGDONGYUAN1994/scDesign3/issues", "RoxygenNote": "7.3.3", "Config/testthat/edition": "3", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "libpng-dev libssl-dev python3 zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 13:01:55 UTC", "RemoteUrl": "https://github.com/bioc/scDesign3", "RemoteRef": "HEAD", "RemoteSha": "61b5ba54de139864ee166823ae4deb698cc443a5", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-04 04:22:48 UTC", "User": "root" }, "Author": "Dongyuan Song [aut, cre] (ORCID:\n),\nQingyang Wang [aut] (ORCID: ),\nChenxin Jiang [aut] (ORCID: )", "Maintainer": "Dongyuan Song ", "_user": "bioc", "_type": "src", "_file": "scDesign3_1.11.0.tar.gz", "_fileid": "https://r2.ropensci.org/a967c36d4cf28a2cc46b9c8191e1aec84389966ab34e3e0e2694c1ae3e4225cc", "_filesize": 868551, "_sha256": "a967c36d4cf28a2cc46b9c8191e1aec84389966ab34e3e0e2694c1ae3e4225cc", "_expires": "2026-10-12T17:12:24.000Z", "_created": "2026-07-04T04:22:48.000Z", "_published": "2026-07-04T17:12:26.253Z", "_bioccheck": { "error": 0, "warning": 1, "note": 13 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28694689018", "_status": "success", "_upstream": "https://github.com/bioc/scDesign3", "_commit": { "id": "61b5ba54de139864ee166823ae4deb698cc443a5", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following 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