{ "_id": "6a1aa9181d7bb097a09d4cb6", "Package": "satuRn", "Type": "Package", "Title": "Scalable Analysis of Differential Transcript Usage for Bulk and\nSingle-Cell RNA-sequencing Applications", "Date": "2022-08-05", "Version": "1.21.0", "Authors@R": "c(person(\"Jeroen\", \"Gilis\", role = c(\"aut\",\"cre\"),\nemail = \"jeroen.gilis@ugent.be\"),\nperson(\"Kristoffer\", \"Vitting-Seerup\", role = \"ctb\",\nemail = \"kristoffer.vittingseerup@bio.ku.dk\"),\nperson(\"Koen\",\"Van den Berge\", role = \"ctb\",\nemail = \"koen.vandenberge@ugent.be\"),\nperson(\"Lieven\",\"Clement\", role=\"ctb\",\nemail = \"Lieven.Clement@ugent.be\"))", "Description": "satuRn provides a higly performant and scalable framework\nfor performing differential transcript usage analyses. The\npackage consists of three main functions. The first function,\nfitDTU, fits quasi-binomial generalized linear models that\nmodel transcript usage in different groups of interest. The\nsecond function, testDTU, tests for differential usage of\ntranscripts between groups of interest. Finally, plotDTU\nvisualizes the usage profiles of transcripts in groups of\ninterest.", "VignetteBuilder": "knitr", "Collate": "'data.R' 'satuRn-framework.R' 'allGenerics.R' 'accessors.R'\n'fitDTU.R' 'testDTU.R' 'plotDTU.R'", "License": "Artistic-2.0", "URL": "https://github.com/statOmics/satuRn", "BugReports": "https://github.com/statOmics/satuRn/issues", "Encoding": "UTF-8", "LazyData": "false", "RoxygenNote": "7.2.0", "biocViews": "Regression, ExperimentalDesign, DifferentialExpression,\nGeneExpression, RNASeq, Sequencing, Software, SingleCell,\nTranscriptomics, MultipleComparison, Visualization", "Config/pak/sysreqs": "zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:55:02 UTC", "RemoteUrl": "https://github.com/bioc/satuRn", "RemoteRef": "HEAD", "RemoteSha": "82b1889cbec9e96a07bdfdf98b4e1d61730564a6", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 06:52:36 UTC", "User": "root" }, "Author": "Jeroen Gilis [aut, cre],\nKristoffer Vitting-Seerup [ctb],\nKoen Van den Berge [ctb],\nLieven Clement [ctb]", "Maintainer": "Jeroen Gilis ", "MD5sum": "3e9a3b5749025dbf34f162dca1e74d35", "_user": "bioc", "_type": "src", "_file": "satuRn_1.21.0.tar.gz", "_fileid": "5f5a3a5bc362567caf2189f87336146a1df0d0ad238b476e35c44b9a36a30cf0", "_filesize": 3672003, "_sha256": "5f5a3a5bc362567caf2189f87336146a1df0d0ad238b476e35c44b9a36a30cf0", "_created": "2026-05-30T06:52:36.000Z", "_published": "2026-05-30T09:08:40.149Z", "_jobs": [ { "job": 78631589658, "time": 204, "config": "bioc-checks", "r": "4.6.0", "check": "WARNING", "artifact": "7306248301" }, { "job": 78631589670, "time": 394, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7306269525" }, { "job": 78631589673, "time": 357, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7306265084" }, { "job": 78631589657, "time": 178, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7307050496" }, { "job": 78631589672, "time": 265, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7307059634" }, { "job": 78631259638, "time": 399, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7306226987" }, { "job": 78631589665, "time": 160, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7306243666" }, { "job": 78631589692, "time": 260, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7306254559" }, { "job": 78631589686, "time": 242, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7306252610" }, { "job": 78631589691, "time": 247, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7306253285" } ], "_bioccheck": { "error": 0, "warning": 1, "note": 8 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26677240317", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/satuRn", "_commit": { "id": "82b1889cbec9e96a07bdfdf98b4e1d61730564a6", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380902 }, "_maintainer": { "name": "Jeroen Gilis", "email": "jeroen.gilis@ugent.be", "login": "jgilis", "twitter": "@GilisJeroen", "description": "Postdoctoral researcher at Chalmers (Sweden) working with genome-scale metabolic models. 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