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"source": "sangeranalyseR.Rmd", "filename": "sangeranalyseR.html", "title": "An Introduction to sangeranalyseR", "author": "Kuan-Hao Chao (ntueeb05howard@gmail.com)", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "How to … (recipe gallery)", "How to assemble a single contig", "How to assemble many contigs at once (SangerAlignment)", "How to use a CSV mapping instead of regex", "How to handle forward-only (or reverse-only) datasets", "How to deal with low-quality / short reads", "How to detect spurious low-overlap merges", "How to choose a consensus base-calling method", "How to interpret the chromatogram", "How to deal with secondary peaks", "How to launch the interactive Shiny app", "How to export results", "Constructor parameter reference", "Required parameters (REGEX path)", "Trimming parameters", "Consensus parameters", "Performance / parallelism parameters", "Troubleshooting", "Citation", "Session info" ], "created": "2019-12-03 16:24:21", "modified": "2026-05-06 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