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"getSeq,TwoBitFile-method", "import,TwoBitFile,ANY,ANY-method", "import.2bit", "import.2bit,ANY-method", "seqinfo,TwoBitFile-method", "TwoBitFile", "TwoBitFile-class" ] }, { "page": "UCSCData-class", "title": "Class \"UCSCData\"", "topics": [ "coerce,GRanges,UCSCData-method", "coerce,UCSCData,GRanges-method", "export.bed,UCSCData,character_OR_connection-method", "export.bed15,UCSCData-method", "export.gff,UCSCData,character_OR_connection-method", "export.ucsc,UCSCData,character_OR_connection-method", "initialize,UCSCData-method", "show,UCSCData-method", "split,UCSCData,ANY-method", "split,UCSCData,Vector-method", "UCSCData-class" ] }, { "page": "UCSCFile-class", "title": "UCSCFile objects", "topics": [ "class:UCSCFile", "export,ANY,UCSCFile,ANY-method", "export,GenomicRanges,UCSCFile,ANY-method", "export,GenomicRangesList,UCSCFile,ANY-method", "export,GRangesList,UCSCFile,ANY-method", "export,UCSCData,UCSCFile,ANY-method", "export.ucsc", "export.ucsc,ANY,ANY-method", "export.ucsc,ANY,BiocFile-method", "import,UCSCFile,ANY,ANY-method", "import.ucsc", "import.ucsc,ANY-method", "import.ucsc,BiocFile-method", "UCSCFile", "UCSCFile-class" ] }, { "page": "ucscGenomes", "title": "Get available genomes on UCSC", "topics": [ "ucscGenomes" ] }, { "page": "UCSCSchema-class", "title": "UCSC Schema", "topics": [ "genome,UCSCSchema-method", "nrow,UCSCSchema-method", "show,UCSCSchema-method", "tableName,UCSCSchema-method", "ucscSchema,UCSCSchemaDescription-method", "UCSCSchema-class" ] }, { "page": "ucscSession-class", "title": "Class \"UCSCSession\"", "topics": [ "genome,ucscCart-method", "genome,UCSCSession-method", "genome<-,UCSCSession-method", "getTable,UCSCSession-method", "initialize,UCSCSession-method", "range,ucscCart-method", "range,UCSCSession-method", "range<-", "range<-,UCSCSession-method", "seqinfo,UCSCSession-method", "track,UCSCSession-method", "track<-,UCSCSession,BiocFile-method", "track<-,UCSCSession,SimpleGRangesList-method", "UCSCSession-class" ] }, { "page": "UCSCTableQuery-class", "title": "Querying UCSC Tables", "topics": [ "browserSession,UCSCTableQuery-method", "browserSession<-", "browserSession<-,UCSCTableQuery-method", "genome,UCSCTableQuery-method", "genome<-,UCSCTableQuery-method", "getTable", "getTable,UCSCTableQuery-method", "hubUrl", "hubUrl,UCSCTableQuery-method", "hubUrl<-,UCSCTableQuery-method", "names,UCSCTableQuery-method", "names<-,UCSCTableQuery-method", "range,UCSCTableQuery-method", "range<-,UCSCTableQuery-method", "show,UCSCTableQuery-method", "tableName", "tableName,UCSCTableQuery-method", "tableName<-", "tableName<-,UCSCTableQuery-method", "tableNames", "tableNames,UCSCTableQuery-method", "track", "track,UCSCTableQuery-method", "ucscSchema", "ucscSchema,UCSCTableQuery-method", "ucscTableQuery", "ucscTableQuery,character-method", "ucscTableQuery,UCSCSession-method", "UCSCTableQuery-class", "ucscTables" ] }, { "page": "ucscTrackModes-class", "title": "Class \"UCSCTrackModes\"", 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