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Installation", "I. Introduction", "II. Workflow", "1. Joining data", "2. Penalties", "1. make_pen", "2. fragment_HL_pen", "3. fragment_inty_pen", "4. score_fun_ave", "3. Fragmentation", "1. fragment_HL", "2. fragment_inty", "3. score_fun_ave", "4. Statistics", "5. Visualization", "III. Outputs", "1. adjusting_HLToInt", "IV. Plots", "1. plot_decay_synt", "2. plot_heatscatter", "3. plot_density", "4. plot_histogram", "5. plot_scatter", "6. plot_volcano", "III. Additional functions", "1. score_fun_ave", "2. gff3_preprocess" ], "created": "2022-09-06 16:53:10", "modified": "2026-04-19 10:17:07", "commits": 5 } ], "_score": 4, "_indexed": true, "_nocasepkg": "rificomparative", "_universes": [ "bioc", "lyoussar", "cyanolabfreiburg" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.13.0", "date": "2026-05-30T09:29:29.000Z", "distro": "noble", "commit": "19caa925edcdf5fe0af65f41ca2a9bba8fe35c53", "fileid": "1f0bbec7be4acca8a4340ed09d48448539d9eeeb34757ae385cc3fd81865f237", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26675761763" }, { "r": "4.6.0", "os": "linux", "version": "1.13.0", "date": "2026-05-30T09:30:27.000Z", "distro": "noble", "commit": "19caa925edcdf5fe0af65f41ca2a9bba8fe35c53", "fileid": "5e13cb02656d4f32ba1af124aa59cb0168aa2724296c0186bc26a20b8cc916cc", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26675761763" }, { "r": "4.5.3", "os": "mac", "version": "1.13.0", "date": "2026-05-30T12:57:32.000Z", "commit": "19caa925edcdf5fe0af65f41ca2a9bba8fe35c53", "fileid": "9ab7ca9e06000cbacd7f682eef7a63c037eccfe2afb8da0b0c769aa4d35a0892", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26675761763" }, { "r": "4.6.0", "os": "mac", "version": "1.13.0", "date": "2026-05-30T12:57:32.000Z", "commit": "19caa925edcdf5fe0af65f41ca2a9bba8fe35c53", "fileid": "49f8dc4d2a6d0f21f73d5ccc5cf475b45e46a94b5ba3a7e43667f276acbf5c18", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26675761763" }, { "r": "4.6.0", "os": "wasm", "version": "1.13.0", "date": "2026-05-30T09:29:05.000Z", "commit": "19caa925edcdf5fe0af65f41ca2a9bba8fe35c53", "fileid": "9cd80a5baffcc1778654c845ab160207a5765d0fc90f4a0dc94632930eb66c92", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26675761763" } ] }