{ "_id": "6a19817aacfb0bcc41df926d", "Package": "rhinotypeR", "Type": "Package", "Title": "Rhinovirus genotyping", "Version": "1.7.0", "Date": "2026-04-28", "Authors@R": "c(\nperson(\"Martha\", \"Luka\", role = c(\"aut\", \"cre\"), email = \"marthaluka20@gmail.com\",\ncomment = c(ORCID = \"0000-0001-6217-4426\")),\nperson(\"Ruth\", \"Nanjala\", role = c(\"aut\")),\nperson(\"Winfred\", \"Gatua\", role = c(\"aut\")),\nperson(\"Wafaa M.\", \"Rashed\", role = c(\"aut\")),\nperson(\"Olaitan\", \"Awe\", role = c(\"aut\"))\n)", "Description": "\"rhinotypeR\" is designed to automate the comparison of\nsequence data against prototype strains, streamlining the\ngenotype assignment process. By implementing predefined\npairwise distance thresholds, this package makes genotype\nassignment accessible to researchers and public health\nprofessionals. This tool enhances our epidemiological toolkit\nby enabling more efficient surveillance and analysis of\nrhinoviruses (RVs) and other viral pathogens with complex\ngenomic landscapes. Additionally, \"rhinotypeR\" supports\ncomprehensive visualization and analysis of single nucleotide\npolymorphisms (SNPs) and amino acid substitutions, facilitating\nin-depth genetic and evolutionary studies.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "LazyData": "false", "biocViews": "Sequencing, Genetics, Phylogenetics, Visualization,\nMultipleSequenceAlignment, MultipleComparison", "VignetteBuilder": "knitr", "Vignettes": "`Introduction to rhinotypeR` = \"vignettes/rhinotypeR.Rmd\"", "URL": "https://github.com/omicscodeathon/rhinotypeR", "BugReports": "https://github.com/omicscodeathon/rhinotypeR/issues", "RoxygenNote": "7.3.3", "Config/testthat/edition": "3", "Config/pak/sysreqs": "libicu-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 13:03:46 UTC", "RemoteUrl": "https://github.com/bioc/rhinotypeR", "RemoteRef": "HEAD", "RemoteSha": "0bfd54c33af0131e6b52918eb3139709e8f03876", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-29 10:14:19 UTC", "User": "root" }, "Author": "Martha Luka [aut, cre] (ORCID: ),\nRuth Nanjala [aut],\nWinfred Gatua [aut],\nWafaa M. 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