{ "_id": "6a1a780d1d7bb097a09d2dc9", "Package": "recount", "Title": "Explore and download data from the recount project", "Version": "1.39.0", "Date": "2024-05-21", "Authors@R": "c(person(\"Leonardo\", \"Collado-Torres\", role = c(\"aut\", \"cre\"),\nemail = \"lcolladotor@gmail.com\", comment = c(ORCID = \"0000-0003-2140-308X\")),\nperson(\"Abhinav\", \"Nellore\", role = \"ctb\",\nemail = \"anellore@gmail.com\"), person(c(\"Andrew\", \"E.\"), \"Jaffe\",\nrole = \"ctb\", email = \"andrew.jaffe@libd.org\",\ncomment = c(ORCID = \"0000-0001-6886-1454\")), person(c(\"Margaret\", \"A.\"),\n\"Taub\", role = \"ctb\", email = \"mtaub@jhsph.edu\"), person(\"Kai\", \"Kammers\",\nrole = \"ctb\", email = \"kai.kammers@gmail.com\"), person(c(\"Shannon\", \"E.\"),\n\"Ellis\", role = \"ctb\", email = \"sellis18@jhmi.edu\",\ncomment = c(ORCID = \"0000-0002-9231-0481\")), person(c(\"Kasper\",\n\"Daniel\"), \"Hansen\", role = c(\"ctb\"),\nemail = \"kasperdanielhansen@gmail.com\",\ncomment = c(ORCID = \"0000-0003-0086-0687\")), person(\"Ben\", \"Langmead\",\nrole = \"ctb\", email = 'langmea@cs.jhu.edu',\ncomment = c(ORCID = \"0000-0003-2437-1976\")), person(c(\"Jeffrey\", \"T.\"),\n\"Leek\", role = c(\"aut\", \"ths\"), email = \"jtleek@gmail.com\",\ncomment = c(ORCID = \"0000-0002-2873-2671\")))", "VignetteBuilder": "knitr", "Description": "Explore and download data from the recount project\navailable at https://jhubiostatistics.shinyapps.io/recount/.\nUsing the recount package you can download\nRangedSummarizedExperiment objects at the gene, exon or\nexon-exon junctions level, the raw counts, the phenotype\nmetadata used, the urls to the sample coverage bigWig files or\nthe mean coverage bigWig file for a particular study. The\nRangedSummarizedExperiment objects can be used by different\npackages for performing differential expression analysis. Using\nhttp://bioconductor.org/packages/derfinder you can perform\nannotation-agnostic differential expression analyses with the\ndata from the recount project as described at\nhttp://www.nature.com/nbt/journal/v35/n4/full/nbt.3838.html.", "License": "Artistic-2.0", "Encoding": "UTF-8", "LazyData": "true", "LazyDataCompression": "xz", "URL": "https://github.com/leekgroup/recount", "BugReports": "https://support.bioconductor.org/t/recount/", "biocViews": "Coverage, DifferentialExpression, GeneExpression, RNASeq,\nSequencing, Software, DataImport, ImmunoOncology", "RoxygenNote": "7.3.1", "Roxygen": "list(markdown = TRUE)", "Config/pak/sysreqs": "cmake make libbz2-dev libicu-dev liblzma-dev\nlibpng-dev libuv1-dev libxml2-dev libssl-dev libx11-dev\nxz-utils zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:43:58 UTC", "RemoteUrl": "https://github.com/bioc/recount", "RemoteRef": "HEAD", "RemoteSha": "a492ff2d6564d74d7208c79b49aa59320eb6675d", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-29 10:25:43 UTC", "User": "root" }, "Author": "Leonardo Collado-Torres [aut, cre] (ORCID:\n),\nAbhinav Nellore [ctb],\nAndrew E. Jaffe [ctb] (ORCID: ),\nMargaret A. Taub [ctb],\nKai Kammers [ctb],\nShannon E. Ellis [ctb] (ORCID: ),\nKasper Daniel Hansen [ctb] (ORCID:\n),\nBen Langmead [ctb] (ORCID: ),\nJeffrey T. Leek [aut, ths] (ORCID:\n)", "Maintainer": "Leonardo Collado-Torres ", "MD5sum": "398cfd912674a1533622d038364a4f30", "_user": "bioc", "_type": "src", "_file": "recount_1.39.0.tar.gz", "_fileid": "02d72c6ba94a501cc04ba80b5087b5ae3b769b2179715103130427a1ff79a36a", "_filesize": 7519985, "_sha256": "02d72c6ba94a501cc04ba80b5087b5ae3b769b2179715103130427a1ff79a36a", "_created": "2026-05-29T10:25:43.000Z", "_published": "2026-05-30T05:39:25.129Z", "_jobs": [ { "job": 78626323373, "time": 304, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7305659587" }, { "job": 78626323390, "time": 737, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7305707223" }, { "job": 78626323634, "time": 697, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7288749733" }, { "job": 78626323381, "time": 550, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7305749469" }, { "job": 78626323655, "time": 476, "config": 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"committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380238 }, "_maintainer": { "name": "Leonardo Collado-Torres", "email": "lcolladotor@gmail.com", "login": "lcolladotor", "bluesky": "@lcolladotor.bsky.social", "linkedin": "in/lcollado", "twitter": "@lcolladotor", "description": "Find more information about myself at my website where I post my recent publications, talks, blog posts and other updates.", "uuid": 2288213, "orcid": "0000-0003-2140-308X" }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "SummarizedExperiment", "role": "Depends" }, { "package": "BiocParallel", "role": "Imports" }, { "package": "derfinder", "role": "Imports" }, { "package": "downloader", "role": "Imports" }, { "package": "GEOquery", "role": "Imports" }, { "package": "GenomeInfoDb", "role": "Imports" }, { "package": "GenomicRanges", "role": "Imports" }, 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