{ "_id": "6a33d6103efcd9bda43b5b6c", "Package": "rain", "Type": "Package", "Title": "Rhythmicity Analysis Incorporating Non-parametric Methods", "Version": "1.47.0", "Date": "2015-09-01", "Author": "Paul F. Thaben, Pål O. Westermark", "Maintainer": "Paul F. Thaben ", "Description": "This package uses non-parametric methods to detect rhythms\nin time series. It deals with outliers, missing values and is\noptimized for time series comprising 10-100 measurements. As it\ndoes not assume expect any distinct waveform it is optimal or\ndetecting oscillating behavior (e.g. circadian or cell cycle)\nin e.g. genome- or proteome-wide biological measurements such\nas: micro arrays, proteome mass spectrometry, or metabolome\nmeasurements.", "License": "GPL-2", "biocViews": "TimeCourse, Genetics, SystemsBiology, Proteomics,\nMicroarray, MultipleComparison", "Encoding": "UTF-8", "Config/pak/sysreqs": "libgmp3-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:39:42 UTC", "RemoteUrl": "https://github.com/bioc/rain", "RemoteRef": "HEAD", "RemoteSha": "d5072f8471b678a18f82ab00041d8e55867d782c", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-18 11:22:30 UTC", "User": "root" }, "MD5sum": "b461aac47c1e545165941997f0dfbc05", "_user": "bioc", "_type": "src", "_file": "rain_1.47.0.tar.gz", "_fileid": "498782d49cffa7c0d05203d7d9043d78500364ef6ebb539279ec8ca09ed45d31", "_filesize": 709803, "_sha256": "498782d49cffa7c0d05203d7d9043d78500364ef6ebb539279ec8ca09ed45d31", "_created": "2026-06-18T11:22:30.000Z", "_published": "2026-06-18T11:27:12.695Z", "_jobs": [ { "job": 82117943048, "time": 147, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7721916366" }, { "job": 82117943015, "time": 163, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7721921483" }, { "job": 82117942991, "time": 164, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7721921685" }, { "job": 82117943021, "time": 78, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7721940121" }, { "job": 82117943020, "time": 121, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7721952042" }, { "job": 82117300269, "time": 216, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7721865803" }, { "job": 82117943012, "time": 100, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7721900804" }, { "job": 82117943059, "time": 102, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7721900702" }, { "job": 82117943065, "time": 81, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7721894606" }, { "job": 82117943084, "time": 101, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7721899941" } ], "_bioccheck": { "error": 2, "warning": 2, "note": 14 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/27755808555", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/rain", "_commit": { "id": "d5072f8471b678a18f82ab00041d8e55867d782c", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379982 }, "_maintainer": { "name": "Paul F. Thaben", "email": "paul.thaben@charite.de" }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" }, { "package": "gmp", "role": "Depends" }, { "package": "multtest", "role": "Depends" }, { "package": "lattice", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.47.0", "bioc": "3.24" }, { "branch": "release", "version": "1.46.0", "bioc": "3.23" } ], "_topics": [ "timecourse", "genetics", "systemsbiology", "proteomics", "microarray", "multiplecomparison" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 440, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_mentions": 2, "_searchresults": 44, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/rain.html", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "rain" ], "_datasets": [ { "name": "menetRNASeqMouseLiver", "title": "Time courses of gene expression in mouse liver", "object": "menetRNASeqMouseLiver", "file": "menetRNASeqMouseLiver.rda", "class": [ "data.frame" ], "fields": [ "ZT_2_1", "ZT_2_2", "ZT_6_1", "ZT_6_2", "ZT_10_1", "ZT_10_2", "ZT_14_1", "ZT_14_2", "ZT_18_1", "ZT_18_2", "ZT_22_1", "ZT_22_2" ], "rows": 20069, "table": true, "tojson": true } ], "_help": [ { "page": "rain-package", "title": "Rythmicity Analysis incooperating Non-parametric Methods", "topics": [ "rain-package" ] }, { "page": "menetRNASeqMouseLiver", "title": "Time courses of gene expression in mouse liver", "topics": [ "menetRNASeqMouseLiver" ] }, { "page": "rain", "title": "Detection of rhythmic behavior in time series.", "topics": [ "rain" ] } ], "_rundeps": [ "Biobase", "BiocGenerics", "generics", "gmp", "lattice", "MASS", "Matrix", "multtest", "survival" ], "_vignettes": [ { "source": "rain.Rnw", "filename": "rain.pdf", "title": "Rain Usage", "engine": "utils::Sweave", "headings": [ "1 Introduction", "2 Usage", "3 References" ], "created": "2014-09-19 23:37:02", "modified": "2017-08-30 15:31:08", "commits": 2 } ], "_score": 4.2455126678141495, "_indexed": true, "_nocasepkg": "rain", "_universes": [ "bioc" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.47.0", "date": "2026-06-18T11:24:57.000Z", "distro": "noble", "commit": "d5072f8471b678a18f82ab00041d8e55867d782c", "fileid": "22e1406f2fd54b59c18584933ec70e340be7e80428f82e059432feaf7adfd128", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/27755808555" }, { "r": "4.6.0", "os": "linux", "version": "1.47.0", "date": "2026-06-18T11:24:57.000Z", "distro": "noble", "commit": "d5072f8471b678a18f82ab00041d8e55867d782c", "fileid": "2d52c9367260560aa864caf250608431c00441cec8f35f7409281819a050d456", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/27755808555" }, { "r": "4.5.3", "os": "mac", "version": "1.47.0", "date": "2026-06-18T11:26:05.000Z", "commit": "d5072f8471b678a18f82ab00041d8e55867d782c", "fileid": "9ed94fb1d24cbee0deb3c2133bda7246297614ab93b3d3e545550b8a64afc2aa", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/27755808555" }, { "r": "4.6.0", "os": "mac", "version": "1.47.0", "date": "2026-06-18T11:26:30.000Z", "commit": "d5072f8471b678a18f82ab00041d8e55867d782c", "fileid": "600bb8f8afe9a1c39b264f825009196481c42361c02eff5753e5fafa6ff61192", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/27755808555" }, { "r": "4.6.0", "os": "wasm", "version": "1.47.0", "date": "2026-06-18T11:24:31.000Z", "commit": "d5072f8471b678a18f82ab00041d8e55867d782c", "fileid": "0ec2519c716409cd0b8a8269e56e98cb3be19578c0d7a3d22104bfd44d011e97", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/27755808555" }, { "r": "4.7.0", "os": "win", "version": "1.47.0", "date": "2026-06-18T11:23:49.000Z", "commit": "d5072f8471b678a18f82ab00041d8e55867d782c", "fileid": "10125e1bbbe4752cc501000bf4605b2c6a4502ee17dc585bf3d8ccd2cb863d67", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/27755808555" }, { "r": "4.5.3", "os": "win", "version": "1.47.0", "date": "2026-06-18T11:23:36.000Z", "commit": "d5072f8471b678a18f82ab00041d8e55867d782c", "fileid": "86873787bb8a61d7bb4135ed17748e46ae2022affaf3552c2670b30a823d0816", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/27755808555" }, { "r": "4.6.0", "os": "win", "version": "1.47.0", "date": "2026-06-18T11:23:47.000Z", "commit": "d5072f8471b678a18f82ab00041d8e55867d782c", "fileid": "529c4e972d61a05753d11a18d80e8278755fe7e554f3bd1568d54f8e9bde962c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/27755808555" } ] }