{
  "_id": "6a5b39fc9baadeef8ab4ccdd",
  "Package": "rain",
  "Type": "Package",
  "Title": "Rhythmicity Analysis Incorporating Non-parametric Methods",
  "Version": "1.47.0",
  "Date": "2015-09-01",
  "Author": "Paul F. Thaben, Pål O. Westermark",
  "Maintainer": "Paul F. Thaben <paul.thaben@charite.de>",
  "Description": "This package uses non-parametric methods to detect rhythms\nin time series. It deals with outliers, missing values and is\noptimized for time series comprising 10-100 measurements. As it\ndoes not assume expect any distinct waveform it is optimal or\ndetecting oscillating behavior (e.g. circadian or cell cycle)\nin e.g. genome- or proteome-wide biological measurements such\nas: micro arrays, proteome mass spectrometry, or metabolome\nmeasurements.",
  "License": "GPL-2",
  "biocViews": "TimeCourse, Genetics, SystemsBiology, Proteomics,\nMicroarray, MultipleComparison",
  "Encoding": "UTF-8",
  "Config/pak/sysreqs": "libgmp3-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:39:42 UTC",
  "RemoteUrl": "https://github.com/bioc/rain",
  "RemoteRef": "HEAD",
  "RemoteSha": "d5072f8471b678a18f82ab00041d8e55867d782c",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-18 08:28:06 UTC",
    "User": "root"
  },
  "_user": "bioc",
  "_type": "src",
  "_file": "rain_1.47.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/6a9cd476ec489ce8a166a2ee1b82edd8cd978e97b0de91642aa8ff3b5b44190f",
  "_filesize": 707919,
  "_sha256": "6a9cd476ec489ce8a166a2ee1b82edd8cd978e97b0de91642aa8ff3b5b44190f",
  "_expires": "2026-10-26T08:31:54.000Z",
  "_created": "2026-07-18T08:28:06.000Z",
  "_published": "2026-07-18T08:31:56.685Z",
  "_bioccheck": {
    "error": 2,
    "warning": 4,
    "note": 13
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/29637395848",
  "_status": "success",
  "_upstream": "https://github.com/bioc/rain",
  "_commit": {
    "id": "d5072f8471b678a18f82ab00041d8e55867d782c",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379982
  },
  "_maintainer": {
    "name": "Paul F. Thaben",
    "email": "paul.thaben@charite.de"
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 88062303258,
      "time": 154,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "8427576979"
    },
    {
      "job": 88062303244,
      "time": 193,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8427582521"
    },
    {
      "job": 88062303241,
      "time": 165,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8427578396"
    },
    {
      "job": 88062303251,
      "time": 112,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8427571176"
    },
    {
      "job": 88062303238,
      "time": 107,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8427570453"
    },
    {
      "job": 88062030908,
      "time": 225,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8427556160"
    },
    {
      "job": 88062303240,
      "time": 101,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8427569842"
    },
    {
      "job": 88062303264,
      "time": 100,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8427569654"
    },
    {
      "job": 88062303304,
      "time": 88,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8427568114"
    },
    {
      "job": 88062303253,
      "time": 104,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8427570235"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "gmp",
      "role": "Depends"
    },
    {
      "package": "multtest",
      "role": "Depends"
    },
    {
      "package": "lattice",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.47.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.46.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "timecourse",
    "genetics",
    "systemsbiology",
    "proteomics",
    "microarray",
    "multiplecomparison"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 447,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 484,
    "source": "https://www.bioconductor.org/packages/stats/bioc/rain"
  },
  "_mentions": 2,
  "_searchresults": 77,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/rain.html",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "rain"
  ],
  "_datasets": [
    {
      "name": "menetRNASeqMouseLiver",
      "title": "Time courses of gene expression in mouse liver",
      "object": "menetRNASeqMouseLiver",
      "file": "menetRNASeqMouseLiver.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "ZT_2_1",
        "ZT_2_2",
        "ZT_6_1",
        "ZT_6_2",
        "ZT_10_1",
        "ZT_10_2",
        "ZT_14_1",
        "ZT_14_2",
        "ZT_18_1",
        "ZT_18_2",
        "ZT_22_1",
        "ZT_22_2"
      ],
      "rows": 20069,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "rain-package",
      "title": "Rythmicity Analysis incooperating Non-parametric Methods",
      "topics": [
        "rain-package"
      ]
    },
    {
      "page": "menetRNASeqMouseLiver",
      "title": "Time courses of gene expression in mouse liver",
      "topics": [
        "menetRNASeqMouseLiver"
      ]
    },
    {
      "page": "rain",
      "title": "Detection of rhythmic behavior in time series.",
      "topics": [
        "rain"
      ]
    }
  ],
  "_rundeps": [
    "Biobase",
    "BiocGenerics",
    "generics",
    "gmp",
    "lattice",
    "MASS",
    "Matrix",
    "multtest",
    "survival"
  ],
  "_vignettes": [
    {
      "source": "rain.Rnw",
      "filename": "rain.pdf",
      "title": "Rain Usage",
      "engine": "utils::Sweave",
      "headings": [
        "1 Introduction",
        "2 Usage",
        "3 References"
      ],
      "created": "2014-09-19 23:37:02",
      "modified": "2017-08-30 15:31:08",
      "commits": 2
    }
  ],
  "_score": 4.488550716500445,
  "_indexed": true,
  "_nocasepkg": "rain",
  "_universes": [
    "bioc"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.47.0",
      "date": "2026-07-18T08:31:09.000Z",
      "distro": "resolute",
      "commit": "d5072f8471b678a18f82ab00041d8e55867d782c",
      "fileid": "https://r2.ropensci.org/68e151c95551831dddd82f8d3634d5489c2d6bd7e010b867088db818ce6b322b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29637395848"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.47.0",
      "date": "2026-07-18T08:30:35.000Z",
      "distro": "resolute",
      "commit": "d5072f8471b678a18f82ab00041d8e55867d782c",
      "fileid": "https://r2.ropensci.org/65583aa1ee7f0c94fa6bc6dae51278ae6b4befccaad172ec7c2d59051f40c95a",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29637395848"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.47.0",
      "date": "2026-07-18T08:29:52.000Z",
      "commit": "d5072f8471b678a18f82ab00041d8e55867d782c",
      "fileid": "https://r2.ropensci.org/307158b42cc3330a8a3131e0650456f38184f85ad9e9dd47dc8277b17950fe3d",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29637395848"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.47.0",
      "date": "2026-07-18T08:29:45.000Z",
      "commit": "d5072f8471b678a18f82ab00041d8e55867d782c",
      "fileid": "https://r2.ropensci.org/e10a5095b8fffa226a8f7591395d4c1c7ac719fc8eefb21f27a1d5e39b0bf7a5",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29637395848"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.47.0",
      "date": "2026-07-18T08:30:05.000Z",
      "commit": "d5072f8471b678a18f82ab00041d8e55867d782c",
      "fileid": "https://r2.ropensci.org/930a3a049f875e0bb03096013aad7d8579a3f54a4aa378e77d327ab22086bd70",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29637395848"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.47.0",
      "date": "2026-07-18T08:29:24.000Z",
      "commit": "d5072f8471b678a18f82ab00041d8e55867d782c",
      "fileid": "https://r2.ropensci.org/e4d5c9fdb5e15b4d48345e25f5005cc02cefea98c58b6dca0728730c3d3b2251",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29637395848"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.47.0",
      "date": "2026-07-18T08:29:12.000Z",
      "commit": "d5072f8471b678a18f82ab00041d8e55867d782c",
      "fileid": "https://r2.ropensci.org/d4ed74d1ab575ce34484bbc97c9f92ecd26c1c5fe864c7e9cbb611d12a0f0f0e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29637395848"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.47.0",
      "date": "2026-07-18T08:29:29.000Z",
      "commit": "d5072f8471b678a18f82ab00041d8e55867d782c",
      "fileid": "https://r2.ropensci.org/951338784f8ab42882ff30ab9dcc70ba409b422a873ae6eefc409665f2d5d005",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29637395848"
    }
  ]
}